Strain Fitness in Shewanella loihica PV-4 around Shew_1046

Experiment: Carbenicillin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaR and Shew_1045 are separated by 64 nucleotidesShew_1045 and Shew_1046 overlap by 20 nucleotidesShew_1046 and Shew_1047 are separated by 8 nucleotides Shew_1044: nhaR - transcriptional activator NhaR (RefSeq), at 1,207,778 to 1,208,686 nhaR Shew_1045: Shew_1045 - hypothetical protein (RefSeq), at 1,208,751 to 1,209,002 _1045 Shew_1046: Shew_1046 - hypothetical protein (RefSeq), at 1,208,983 to 1,209,438 _1046 Shew_1047: Shew_1047 - L-aspartate oxidase (RefSeq), at 1,209,447 to 1,211,060 _1047 Position (kb) 1208 1209 1210Strain fitness (log2 ratio) -2 -1 0 1at 1208.162 kb on - strand, within nhaRat 1208.331 kb on + strand, within nhaRat 1208.830 kb on + strand, within Shew_1045at 1209.010 kb on - strandat 1209.020 kb on + strandat 1209.121 kb on - strand, within Shew_1046at 1209.177 kb on + strand, within Shew_1046at 1209.191 kb on + strand, within Shew_1046

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml
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1,208,162 - nhaR Shew_1044 0.42 +0.4
1,208,331 + nhaR Shew_1044 0.61 +0.4
1,208,830 + Shew_1045 0.31 -2.0
1,209,010 - +1.5
1,209,020 + +0.4
1,209,121 - Shew_1046 0.30 +0.4
1,209,177 + Shew_1046 0.43 +0.3
1,209,191 + Shew_1046 0.46 +1.3

Or see this region's nucleotide sequence