Strain Fitness in Shewanella loihica PV-4 around Shew_0917

Experiment: Carbenicillin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0915 and Shew_0916 overlap by 11 nucleotidesShew_0916 and Shew_0917 are separated by 160 nucleotidesShew_0917 and Shew_0918 are separated by 158 nucleotides Shew_0915: Shew_0915 - putative transcriptional regulator (RefSeq), at 1,034,962 to 1,035,618 _0915 Shew_0916: Shew_0916 - pseudouridine synthase (RefSeq), at 1,035,608 to 1,036,318 _0916 Shew_0917: Shew_0917 - LysR family transcriptional regulator (RefSeq), at 1,036,479 to 1,037,444 _0917 Shew_0918: Shew_0918 - decaheme cytochrome c (RefSeq), at 1,037,603 to 1,039,897 _0918 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1at 1035.682 kb on + strand, within Shew_0916at 1035.842 kb on + strand, within Shew_0916at 1036.023 kb on + strand, within Shew_0916at 1036.138 kb on + strand, within Shew_0916at 1036.146 kb on - strand, within Shew_0916at 1036.153 kb on + strand, within Shew_0916at 1036.833 kb on - strand, within Shew_0917at 1036.991 kb on - strand, within Shew_0917at 1037.261 kb on - strand, within Shew_0917at 1037.960 kb on + strand, within Shew_0918at 1037.960 kb on + strand, within Shew_0918at 1037.960 kb on + strand, within Shew_0918at 1037.968 kb on - strand, within Shew_0918at 1038.111 kb on + strand, within Shew_0918at 1038.189 kb on + strand, within Shew_0918at 1038.421 kb on + strand, within Shew_0918

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml
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1,035,682 + Shew_0916 0.10 -3.1
1,035,842 + Shew_0916 0.33 -0.2
1,036,023 + Shew_0916 0.58 -0.0
1,036,138 + Shew_0916 0.75 +0.1
1,036,146 - Shew_0916 0.76 -0.2
1,036,153 + Shew_0916 0.77 +0.0
1,036,833 - Shew_0917 0.37 +0.8
1,036,991 - Shew_0917 0.53 +0.7
1,037,261 - Shew_0917 0.81 +1.0
1,037,960 + Shew_0918 0.16 +0.1
1,037,960 + Shew_0918 0.16 +0.9
1,037,960 + Shew_0918 0.16 +1.0
1,037,968 - Shew_0918 0.16 -0.4
1,038,111 + Shew_0918 0.22 -2.6
1,038,189 + Shew_0918 0.26 -0.1
1,038,421 + Shew_0918 0.36 -0.8

Or see this region's nucleotide sequence