Experiment: Carbenicillin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0915 and Shew_0916 overlap by 11 nucleotides Shew_0916 and Shew_0917 are separated by 160 nucleotides Shew_0917 and Shew_0918 are separated by 158 nucleotides
Shew_0915: Shew_0915 - putative transcriptional regulator (RefSeq), at 1,034,962 to 1,035,618
_0915
Shew_0916: Shew_0916 - pseudouridine synthase (RefSeq), at 1,035,608 to 1,036,318
_0916
Shew_0917: Shew_0917 - LysR family transcriptional regulator (RefSeq), at 1,036,479 to 1,037,444
_0917
Shew_0918: Shew_0918 - decaheme cytochrome c (RefSeq), at 1,037,603 to 1,039,897
_0918
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1035.682 kb on + strand, within Shew_0916 at 1035.842 kb on + strand, within Shew_0916 at 1036.023 kb on + strand, within Shew_0916 at 1036.138 kb on + strand, within Shew_0916 at 1036.146 kb on - strand, within Shew_0916 at 1036.153 kb on + strand, within Shew_0916 at 1036.833 kb on - strand, within Shew_0917 at 1036.991 kb on - strand, within Shew_0917 at 1037.261 kb on - strand, within Shew_0917 at 1037.960 kb on + strand, within Shew_0918 at 1037.960 kb on + strand, within Shew_0918 at 1037.960 kb on + strand, within Shew_0918 at 1037.968 kb on - strand, within Shew_0918 at 1038.111 kb on + strand, within Shew_0918 at 1038.189 kb on + strand, within Shew_0918 at 1038.421 kb on + strand, within Shew_0918
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml remove 1,035,682 + Shew_0916 0.10 -3.1 1,035,842 + Shew_0916 0.33 -0.2 1,036,023 + Shew_0916 0.58 -0.0 1,036,138 + Shew_0916 0.75 +0.1 1,036,146 - Shew_0916 0.76 -0.2 1,036,153 + Shew_0916 0.77 +0.0 1,036,833 - Shew_0917 0.37 +0.8 1,036,991 - Shew_0917 0.53 +0.7 1,037,261 - Shew_0917 0.81 +1.0 1,037,960 + Shew_0918 0.16 +0.1 1,037,960 + Shew_0918 0.16 +0.9 1,037,960 + Shew_0918 0.16 +1.0 1,037,968 - Shew_0918 0.16 -0.4 1,038,111 + Shew_0918 0.22 -2.6 1,038,189 + Shew_0918 0.26 -0.1 1,038,421 + Shew_0918 0.36 -0.8
Or see this region's nucleotide sequence