Strain Fitness in Shewanella loihica PV-4 around Shew_0827

Experiment: Carbenicillin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0826 and Shew_0827 are separated by 110 nucleotidesShew_0827 and Shew_0828 are separated by 4 nucleotidesShew_0828 and Shew_0829 are separated by 100 nucleotides Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949 _0826 Shew_0827: Shew_0827 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 950,060 to 950,707 _0827 Shew_0828: Shew_0828 - LysR family transcriptional regulator (RefSeq), at 950,712 to 951,605 _0828 Shew_0829: Shew_0829 - LrgA family protein (RefSeq), at 951,706 to 952,125 _0829 Position (kb) 950 951Strain fitness (log2 ratio) -1 0 1at 949.226 kb on + strand, within Shew_0826at 949.761 kb on + strand, within Shew_0826at 949.796 kb on + strand, within Shew_0826at 949.845 kb on + strand, within Shew_0826at 949.853 kb on - strand, within Shew_0826at 950.145 kb on - strand, within Shew_0827at 950.676 kb on + strandat 950.696 kb on - strandat 951.502 kb on + strand, within Shew_0828at 951.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml
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949,226 + Shew_0826 0.22 +0.7
949,761 + Shew_0826 0.80 +0.3
949,796 + Shew_0826 0.83 +0.4
949,845 + Shew_0826 0.89 +0.0
949,853 - Shew_0826 0.90 +0.3
950,145 - Shew_0827 0.13 -1.2
950,676 + +0.4
950,696 - +0.9
951,502 + Shew_0828 0.88 +0.5
951,549 + +0.3

Or see this region's nucleotide sequence