Experiment: Carbenicillin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0646 and Shew_0647 are separated by 14 nucleotides Shew_0647 and Shew_0648 are separated by 7 nucleotides Shew_0648 and Shew_0649 are separated by 4 nucleotides Shew_0649 and Shew_0650 overlap by 1 nucleotides
Shew_0646: Shew_0646 - SAF domain-containing protein (RefSeq), at 735,195 to 736,091
_0646
Shew_0647: Shew_0647 - hypothetical protein (RefSeq), at 736,106 to 736,297
_0647
Shew_0648: Shew_0648 - hypothetical protein (RefSeq), at 736,305 to 736,976
_0648
Shew_0649: Shew_0649 - hypothetical protein (RefSeq), at 736,981 to 737,841
_0649
Shew_0650: Shew_0650 - hypothetical protein (RefSeq), at 737,841 to 739,199
_0650
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 736.189 kb on - strand, within Shew_0647 at 736.217 kb on - strand, within Shew_0647 at 736.292 kb on + strand at 736.439 kb on + strand, within Shew_0648 at 736.586 kb on + strand, within Shew_0648 at 736.836 kb on - strand, within Shew_0648 at 736.936 kb on - strand at 736.991 kb on - strand at 737.069 kb on + strand, within Shew_0649 at 737.115 kb on - strand, within Shew_0649 at 737.205 kb on - strand, within Shew_0649 at 737.249 kb on - strand, within Shew_0649 at 737.285 kb on + strand, within Shew_0649 at 737.293 kb on - strand, within Shew_0649 at 737.322 kb on + strand, within Shew_0649 at 737.417 kb on - strand, within Shew_0649 at 737.704 kb on - strand, within Shew_0649 at 737.812 kb on - strand at 737.859 kb on + strand at 737.864 kb on + strand at 737.867 kb on - strand at 737.869 kb on + strand at 737.877 kb on - strand at 737.925 kb on - strand at 738.086 kb on + strand, within Shew_0650 at 738.787 kb on - strand, within Shew_0650 at 738.796 kb on - strand, within Shew_0650
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml remove 736,189 - Shew_0647 0.43 -0.4 736,217 - Shew_0647 0.58 -0.2 736,292 + +0.1 736,439 + Shew_0648 0.20 +0.2 736,586 + Shew_0648 0.42 -1.5 736,836 - Shew_0648 0.79 +0.1 736,936 - -0.0 736,991 - +0.4 737,069 + Shew_0649 0.10 +0.2 737,115 - Shew_0649 0.16 -0.6 737,205 - Shew_0649 0.26 -0.1 737,249 - Shew_0649 0.31 -0.7 737,285 + Shew_0649 0.35 -0.2 737,293 - Shew_0649 0.36 +0.5 737,322 + Shew_0649 0.40 -0.2 737,417 - Shew_0649 0.51 -0.8 737,704 - Shew_0649 0.84 -2.8 737,812 - +0.4 737,859 + +0.3 737,864 + -0.2 737,867 - +0.3 737,869 + -0.6 737,877 - +0.1 737,925 - -0.1 738,086 + Shew_0650 0.18 -0.8 738,787 - Shew_0650 0.70 -0.2 738,796 - Shew_0650 0.70 -0.3
Or see this region's nucleotide sequence