Experiment: Carbenicillin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0504 and Shew_0505 are separated by 56 nucleotides Shew_0505 and Shew_0506 are separated by 67 nucleotides
Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088
_0504
Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503
_0505
Shew_0506: Shew_0506 - LysR family transcriptional regulator (RefSeq), at 564,571 to 565,488
_0506
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1 at 562.331 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.746 kb on - strand, within Shew_0504 at 562.847 kb on + strand, within Shew_0504 at 562.872 kb on - strand, within Shew_0504 at 563.274 kb on + strand at 563.369 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.607 kb on + strand, within Shew_0505 at 563.831 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.977 kb on - strand, within Shew_0505 at 563.988 kb on - strand, within Shew_0505 at 564.182 kb on - strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.419 kb on + strand at 564.433 kb on + strand at 564.478 kb on - strand at 564.583 kb on - strand at 564.723 kb on + strand, within Shew_0506 at 564.728 kb on + strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.736 kb on - strand, within Shew_0506 at 564.977 kb on - strand, within Shew_0506 at 565.411 kb on - strand at 565.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml remove 562,331 + Shew_0504 0.37 -0.2 562,518 + Shew_0504 0.53 -0.0 562,518 + Shew_0504 0.53 +0.1 562,746 - Shew_0504 0.72 -0.4 562,847 + Shew_0504 0.80 -0.3 562,872 - Shew_0504 0.82 +0.3 563,274 + +0.3 563,369 + Shew_0505 0.16 +0.3 563,404 + Shew_0505 0.19 +0.5 563,404 + Shew_0505 0.19 +0.7 563,404 + Shew_0505 0.19 +0.4 563,607 + Shew_0505 0.34 +0.3 563,831 + Shew_0505 0.50 -0.3 563,969 + Shew_0505 0.61 -0.1 563,969 + Shew_0505 0.61 +0.3 563,977 - Shew_0505 0.61 +0.1 563,988 - Shew_0505 0.62 +0.5 564,182 - Shew_0505 0.76 +0.2 564,279 + Shew_0505 0.83 +0.2 564,279 + Shew_0505 0.83 +0.4 564,419 + +0.9 564,433 + +0.2 564,478 - -0.3 564,583 - +0.4 564,723 + Shew_0506 0.17 +0.4 564,728 + Shew_0506 0.17 -0.2 564,731 - Shew_0506 0.17 +0.2 564,731 - Shew_0506 0.17 -0.1 564,736 - Shew_0506 0.18 -0.8 564,977 - Shew_0506 0.44 -0.1 565,411 - -0.2 565,443 + -1.1
Or see this region's nucleotide sequence