Experiment: Carbenicillin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0433 and Shew_0434 are separated by 92 nucleotides Shew_0434 and Shew_0435 are separated by 247 nucleotides Shew_0435 and Shew_0436 are separated by 14 nucleotides
Shew_0433: Shew_0433 - hypothetical protein (RefSeq), at 484,694 to 485,083
_0433
Shew_0434: Shew_0434 - hypothetical protein (RefSeq), at 485,176 to 485,487
_0434
Shew_0435: Shew_0435 - hypothetical protein (RefSeq), at 485,735 to 486,256
_0435
Shew_0436: Shew_0436 - diguanylate cyclase/phosphodiesterase (RefSeq), at 486,271 to 488,043
_0436
Position (kb) 485
486
487 Strain fitness (log2 ratio) -2
-1
0
1 at 484.774 kb on + strand, within Shew_0433 at 484.781 kb on - strand, within Shew_0433 at 485.365 kb on + strand, within Shew_0434 at 485.406 kb on + strand, within Shew_0434 at 485.698 kb on - strand at 486.035 kb on - strand, within Shew_0435 at 486.333 kb on + strand at 486.443 kb on - strand at 486.482 kb on - strand, within Shew_0436 at 486.554 kb on - strand, within Shew_0436 at 486.709 kb on + strand, within Shew_0436 at 486.875 kb on - strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 487.012 kb on + strand, within Shew_0436 at 487.218 kb on + strand, within Shew_0436
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml remove 484,774 + Shew_0433 0.21 -1.2 484,781 - Shew_0433 0.22 -0.2 485,365 + Shew_0434 0.61 -0.4 485,406 + Shew_0434 0.74 +0.1 485,698 - -2.3 486,035 - Shew_0435 0.57 -1.6 486,333 + +0.5 486,443 - +0.3 486,482 - Shew_0436 0.12 +0.7 486,554 - Shew_0436 0.16 -0.9 486,709 + Shew_0436 0.25 +0.1 486,875 - Shew_0436 0.34 -0.1 486,905 + Shew_0436 0.36 -0.5 486,905 + Shew_0436 0.36 +0.5 487,012 + Shew_0436 0.42 +0.6 487,218 + Shew_0436 0.53 -0.2
Or see this region's nucleotide sequence