Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3371

Experiment: m.b. Cobalt chloride 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3369 and Dshi_3370 are separated by 64 nucleotidesDshi_3370 and Dshi_3371 are separated by 92 nucleotidesDshi_3371 and Dshi_3372 are separated by 227 nucleotidesDshi_3372 and Dshi_3373 are separated by 21 nucleotides Dshi_3369: Dshi_3369 - formamidopyrimidine-DNA glycosylase (RefSeq), at 3,541,951 to 3,542,805 _3369 Dshi_3370: Dshi_3370 - Enoyl-CoA hydratase/isomerase (RefSeq), at 3,542,870 to 3,543,646 _3370 Dshi_3371: Dshi_3371 - ribosomal protein S20 (RefSeq), at 3,543,739 to 3,544,005 _3371 Dshi_3372: Dshi_3372 - hypothetical protein (RefSeq), at 3,544,233 to 3,544,682 _3372 Dshi_3373: Dshi_3373 - chromosomal replication initiator protein DnaA (RefSeq), at 3,544,704 to 3,546,086 _3373 Position (kb) 3543 3544 3545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3542.751 kb on - strandat 3542.763 kb on + strandat 3542.771 kb on - strandat 3542.776 kb on + strandat 3542.795 kb on + strandat 3542.805 kb on + strandat 3542.813 kb on - strandat 3542.825 kb on + strandat 3543.655 kb on - strandat 3544.564 kb on + strand, within Dshi_3372

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
remove
3,542,751 - +0.2
3,542,763 + +1.9
3,542,771 - +0.9
3,542,776 + +1.4
3,542,795 + +1.7
3,542,805 + +0.0
3,542,813 - +0.2
3,542,825 + +0.4
3,543,655 - +1.1
3,544,564 + Dshi_3372 0.74 -2.8

Or see this region's nucleotide sequence