Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2948

Experiment: m.b. Cobalt chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2947 and Dshi_2948 are separated by 88 nucleotidesDshi_2948 and Dshi_2949 are separated by 354 nucleotides Dshi_2947: Dshi_2947 - Homospermidine synthase (RefSeq), at 3,106,547 to 3,107,965 _2947 Dshi_2948: Dshi_2948 - RNA-binding S4 domain protein (RefSeq), at 3,108,054 to 3,108,674 _2948 Dshi_2949: Dshi_2949 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 3,109,029 to 3,111,326 _2949 Position (kb) 3108 3109Strain fitness (log2 ratio) -2 -1 0 1 2at 3107.553 kb on + strand, within Dshi_2947at 3108.005 kb on - strandat 3109.187 kb on - strandat 3109.296 kb on - strand, within Dshi_2949at 3109.308 kb on - strand, within Dshi_2949at 3109.627 kb on - strand, within Dshi_2949at 3109.634 kb on + strand, within Dshi_2949at 3109.649 kb on - strand, within Dshi_2949

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
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3,107,553 + Dshi_2947 0.71 -0.1
3,108,005 - -1.8
3,109,187 - -0.1
3,109,296 - Dshi_2949 0.12 +0.4
3,109,308 - Dshi_2949 0.12 +0.1
3,109,627 - Dshi_2949 0.26 +0.3
3,109,634 + Dshi_2949 0.26 +1.9
3,109,649 - Dshi_2949 0.27 -1.0

Or see this region's nucleotide sequence