Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2770

Experiment: m.b. Cobalt chloride 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2768 and Dshi_2769 are separated by 42 nucleotidesDshi_2769 and Dshi_2770 overlap by 4 nucleotidesDshi_2770 and Dshi_2771 are separated by 137 nucleotides Dshi_2768: Dshi_2768 - hypothetical protein (RefSeq), at 2,930,293 to 2,931,126 _2768 Dshi_2769: Dshi_2769 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,931,169 to 2,931,762 _2769 Dshi_2770: Dshi_2770 - magnesium transporter (RefSeq), at 2,931,759 to 2,933,141 _2770 Dshi_2771: Dshi_2771 - Guanine deaminase (RefSeq), at 2,933,279 to 2,934,565 _2771 Position (kb) 2931 2932 2933 2934Strain fitness (log2 ratio) -2 -1 0 1at 2930.792 kb on - strand, within Dshi_2768at 2930.824 kb on - strand, within Dshi_2768at 2930.831 kb on + strand, within Dshi_2768at 2931.117 kb on + strandat 2931.120 kb on - strandat 2931.125 kb on - strandat 2931.137 kb on - strandat 2931.143 kb on - strandat 2931.143 kb on - strandat 2931.143 kb on - strandat 2931.164 kb on - strandat 2931.174 kb on + strandat 2931.193 kb on - strandat 2931.262 kb on + strand, within Dshi_2769at 2931.270 kb on + strand, within Dshi_2769at 2931.275 kb on + strand, within Dshi_2769at 2931.280 kb on + strand, within Dshi_2769at 2931.311 kb on - strand, within Dshi_2769at 2931.384 kb on + strand, within Dshi_2769at 2931.704 kb on - strandat 2931.742 kb on + strandat 2932.732 kb on + strand, within Dshi_2770at 2933.043 kb on + strandat 2933.106 kb on + strandat 2933.146 kb on + strandat 2933.173 kb on + strandat 2933.263 kb on + strandat 2933.263 kb on + strandat 2933.263 kb on + strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.337 kb on + strandat 2933.356 kb on - strandat 2933.499 kb on + strand, within Dshi_2771at 2933.576 kb on - strand, within Dshi_2771at 2933.669 kb on + strand, within Dshi_2771at 2933.810 kb on + strand, within Dshi_2771at 2933.889 kb on + strand, within Dshi_2771at 2933.952 kb on + strand, within Dshi_2771at 2933.960 kb on - strand, within Dshi_2771at 2933.978 kb on - strand, within Dshi_2771at 2934.000 kb on - strand, within Dshi_2771at 2934.005 kb on - strand, within Dshi_2771at 2934.040 kb on - strand, within Dshi_2771at 2934.097 kb on - strand, within Dshi_2771at 2934.116 kb on - strand, within Dshi_2771at 2934.137 kb on + strand, within Dshi_2771at 2934.137 kb on + strand, within Dshi_2771

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
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2,930,792 - Dshi_2768 0.60 +0.5
2,930,824 - Dshi_2768 0.64 +0.4
2,930,831 + Dshi_2768 0.65 -0.8
2,931,117 + -0.6
2,931,120 - +1.1
2,931,125 - -0.7
2,931,137 - -1.3
2,931,143 - -1.1
2,931,143 - -0.3
2,931,143 - -0.6
2,931,164 - -0.0
2,931,174 + -0.8
2,931,193 - +0.8
2,931,262 + Dshi_2769 0.16 +0.5
2,931,270 + Dshi_2769 0.17 -0.8
2,931,275 + Dshi_2769 0.18 -1.5
2,931,280 + Dshi_2769 0.19 +1.4
2,931,311 - Dshi_2769 0.24 -0.8
2,931,384 + Dshi_2769 0.36 -0.9
2,931,704 - -0.2
2,931,742 + -0.4
2,932,732 + Dshi_2770 0.70 -1.0
2,933,043 + +1.2
2,933,106 + -0.8
2,933,146 + -0.8
2,933,173 + -0.3
2,933,263 + +0.4
2,933,263 + -0.8
2,933,263 + -2.2
2,933,271 - -0.2
2,933,271 - -0.3
2,933,271 - +0.5
2,933,271 - -0.2
2,933,337 + -0.6
2,933,356 - -0.9
2,933,499 + Dshi_2771 0.17 +0.2
2,933,576 - Dshi_2771 0.23 -0.6
2,933,669 + Dshi_2771 0.30 +0.7
2,933,810 + Dshi_2771 0.41 -0.8
2,933,889 + Dshi_2771 0.47 -0.9
2,933,952 + Dshi_2771 0.52 +1.4
2,933,960 - Dshi_2771 0.53 +0.6
2,933,978 - Dshi_2771 0.54 -0.6
2,934,000 - Dshi_2771 0.56 -1.8
2,934,005 - Dshi_2771 0.56 +0.1
2,934,040 - Dshi_2771 0.59 -0.9
2,934,097 - Dshi_2771 0.64 -0.6
2,934,116 - Dshi_2771 0.65 -2.0
2,934,137 + Dshi_2771 0.67 +0.6
2,934,137 + Dshi_2771 0.67 -1.2

Or see this region's nucleotide sequence