Experiment: m.b. Cobalt chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2768 and Dshi_2769 are separated by 42 nucleotides Dshi_2769 and Dshi_2770 overlap by 4 nucleotides Dshi_2770 and Dshi_2771 are separated by 137 nucleotides
Dshi_2768: Dshi_2768 - hypothetical protein (RefSeq), at 2,930,293 to 2,931,126
_2768
Dshi_2769: Dshi_2769 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,931,169 to 2,931,762
_2769
Dshi_2770: Dshi_2770 - magnesium transporter (RefSeq), at 2,931,759 to 2,933,141
_2770
Dshi_2771: Dshi_2771 - Guanine deaminase (RefSeq), at 2,933,279 to 2,934,565
_2771
Position (kb)
2931
2932
2933
2934 Strain fitness (log2 ratio)
-2
-1
0
1 at 2930.792 kb on - strand, within Dshi_2768 at 2930.824 kb on - strand, within Dshi_2768 at 2930.831 kb on + strand, within Dshi_2768 at 2931.117 kb on + strand at 2931.120 kb on - strand at 2931.125 kb on - strand at 2931.137 kb on - strand at 2931.143 kb on - strand at 2931.143 kb on - strand at 2931.143 kb on - strand at 2931.164 kb on - strand at 2931.174 kb on + strand at 2931.193 kb on - strand at 2931.262 kb on + strand, within Dshi_2769 at 2931.270 kb on + strand, within Dshi_2769 at 2931.275 kb on + strand, within Dshi_2769 at 2931.280 kb on + strand, within Dshi_2769 at 2931.311 kb on - strand, within Dshi_2769 at 2931.384 kb on + strand, within Dshi_2769 at 2931.704 kb on - strand at 2931.742 kb on + strand at 2932.732 kb on + strand, within Dshi_2770 at 2933.043 kb on + strand at 2933.106 kb on + strand at 2933.146 kb on + strand at 2933.173 kb on + strand at 2933.263 kb on + strand at 2933.263 kb on + strand at 2933.263 kb on + strand at 2933.271 kb on - strand at 2933.271 kb on - strand at 2933.271 kb on - strand at 2933.271 kb on - strand at 2933.337 kb on + strand at 2933.356 kb on - strand at 2933.499 kb on + strand, within Dshi_2771 at 2933.576 kb on - strand, within Dshi_2771 at 2933.669 kb on + strand, within Dshi_2771 at 2933.810 kb on + strand, within Dshi_2771 at 2933.889 kb on + strand, within Dshi_2771 at 2933.952 kb on + strand, within Dshi_2771 at 2933.960 kb on - strand, within Dshi_2771 at 2933.978 kb on - strand, within Dshi_2771 at 2934.000 kb on - strand, within Dshi_2771 at 2934.005 kb on - strand, within Dshi_2771 at 2934.040 kb on - strand, within Dshi_2771 at 2934.097 kb on - strand, within Dshi_2771 at 2934.116 kb on - strand, within Dshi_2771 at 2934.137 kb on + strand, within Dshi_2771 at 2934.137 kb on + strand, within Dshi_2771
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM remove 2,930,792 - Dshi_2768 0.60 +0.5 2,930,824 - Dshi_2768 0.64 +0.4 2,930,831 + Dshi_2768 0.65 -0.8 2,931,117 + -0.6 2,931,120 - +1.1 2,931,125 - -0.7 2,931,137 - -1.3 2,931,143 - -1.1 2,931,143 - -0.3 2,931,143 - -0.6 2,931,164 - -0.0 2,931,174 + -0.8 2,931,193 - +0.8 2,931,262 + Dshi_2769 0.16 +0.5 2,931,270 + Dshi_2769 0.17 -0.8 2,931,275 + Dshi_2769 0.18 -1.5 2,931,280 + Dshi_2769 0.19 +1.4 2,931,311 - Dshi_2769 0.24 -0.8 2,931,384 + Dshi_2769 0.36 -0.9 2,931,704 - -0.2 2,931,742 + -0.4 2,932,732 + Dshi_2770 0.70 -1.0 2,933,043 + +1.2 2,933,106 + -0.8 2,933,146 + -0.8 2,933,173 + -0.3 2,933,263 + +0.4 2,933,263 + -0.8 2,933,263 + -2.2 2,933,271 - -0.2 2,933,271 - -0.3 2,933,271 - +0.5 2,933,271 - -0.2 2,933,337 + -0.6 2,933,356 - -0.9 2,933,499 + Dshi_2771 0.17 +0.2 2,933,576 - Dshi_2771 0.23 -0.6 2,933,669 + Dshi_2771 0.30 +0.7 2,933,810 + Dshi_2771 0.41 -0.8 2,933,889 + Dshi_2771 0.47 -0.9 2,933,952 + Dshi_2771 0.52 +1.4 2,933,960 - Dshi_2771 0.53 +0.6 2,933,978 - Dshi_2771 0.54 -0.6 2,934,000 - Dshi_2771 0.56 -1.8 2,934,005 - Dshi_2771 0.56 +0.1 2,934,040 - Dshi_2771 0.59 -0.9 2,934,097 - Dshi_2771 0.64 -0.6 2,934,116 - Dshi_2771 0.65 -2.0 2,934,137 + Dshi_2771 0.67 +0.6 2,934,137 + Dshi_2771 0.67 -1.2
Or see this region's nucleotide sequence