Experiment: m.b. Cobalt chloride 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_R0044 and Dshi_2381 are separated by 190 nucleotides Dshi_2381 and Dshi_2382 are separated by 36 nucleotides Dshi_2382 and Dshi_2383 are separated by 411 nucleotides
Dshi_R0044: Dshi_R0044 - tRNA-Leu (RefSeq), at 2,515,206 to 2,515,292
_R0044
Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145
_2381
Dshi_2382: Dshi_2382 - hypothetical protein (RefSeq), at 2,516,182 to 2,516,721
_2382
Dshi_2383: Dshi_2383 - Cytochrome c oxidase subunit I type (RefSeq), at 2,517,133 to 2,518,809
_2383
Position (kb)
2516
2517 Strain fitness (log2 ratio)
-1
0
1 at 2515.459 kb on + strand at 2516.140 kb on + strand at 2516.200 kb on - strand at 2516.219 kb on - strand at 2516.243 kb on - strand, within Dshi_2382 at 2516.249 kb on + strand, within Dshi_2382 at 2516.257 kb on - strand, within Dshi_2382 at 2516.285 kb on - strand, within Dshi_2382 at 2516.668 kb on - strand at 2516.760 kb on + strand at 2516.835 kb on + strand at 2516.958 kb on - strand at 2517.137 kb on - strand at 2517.280 kb on + strand at 2517.395 kb on - strand, within Dshi_2383 at 2517.678 kb on - strand, within Dshi_2383
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM remove 2,515,459 + +0.2 2,516,140 + +0.2 2,516,200 - +0.2 2,516,219 - +0.3 2,516,243 - Dshi_2382 0.11 -1.1 2,516,249 + Dshi_2382 0.12 -0.1 2,516,257 - Dshi_2382 0.14 +0.1 2,516,285 - Dshi_2382 0.19 +0.1 2,516,668 - -0.6 2,516,760 + -1.1 2,516,835 + -0.8 2,516,958 - -0.6 2,517,137 - +0.6 2,517,280 + -0.2 2,517,395 - Dshi_2383 0.16 -0.2 2,517,678 - Dshi_2383 0.32 -0.1
Or see this region's nucleotide sequence