Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0375

Experiment: m.b. Cobalt chloride 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0373 and Dshi_0374 are separated by 58 nucleotidesDshi_0374 and Dshi_0375 overlap by 4 nucleotidesDshi_0375 and Dshi_0376 are separated by 143 nucleotides Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843 _0373 Dshi_0374: Dshi_0374 - hypothetical protein (RefSeq), at 357,902 to 358,156 _0374 Dshi_0375: Dshi_0375 - ABC transporter related (RefSeq), at 358,153 to 358,974 _0375 Dshi_0376: Dshi_0376 - inner-membrane translocator (RefSeq), at 359,118 to 360,107 _0376 Position (kb) 358 359Strain fitness (log2 ratio) -2 -1 0 1 2 3at 357.160 kb on - strand, within Dshi_0373at 357.219 kb on - strand, within Dshi_0373at 357.260 kb on + strand, within Dshi_0373at 357.285 kb on + strand, within Dshi_0373at 357.292 kb on + strand, within Dshi_0373at 357.293 kb on - strand, within Dshi_0373at 357.533 kb on + strand, within Dshi_0373at 357.645 kb on + strand, within Dshi_0373at 357.647 kb on + strandat 357.647 kb on + strandat 357.766 kb on + strandat 357.766 kb on + strandat 357.853 kb on + strandat 357.866 kb on - strandat 357.967 kb on + strand, within Dshi_0374at 358.281 kb on - strand, within Dshi_0375at 358.415 kb on - strand, within Dshi_0375at 358.437 kb on + strand, within Dshi_0375at 358.500 kb on + strand, within Dshi_0375at 358.538 kb on + strand, within Dshi_0375at 358.538 kb on + strand, within Dshi_0375at 358.690 kb on - strand, within Dshi_0375at 358.695 kb on - strand, within Dshi_0375at 358.721 kb on - strand, within Dshi_0375at 358.836 kb on + strand, within Dshi_0375at 358.850 kb on + strand, within Dshi_0375at 358.858 kb on - strand, within Dshi_0375at 358.869 kb on + strand, within Dshi_0375at 358.952 kb on + strandat 359.034 kb on - strandat 359.037 kb on + strandat 359.090 kb on + strandat 359.090 kb on + strandat 359.097 kb on + strandat 359.097 kb on + strandat 359.097 kb on + strandat 359.097 kb on + strandat 359.097 kb on + strandat 359.097 kb on + strandat 359.105 kb on - strandat 359.119 kb on + strandat 359.127 kb on - strandat 359.439 kb on - strand, within Dshi_0376at 359.523 kb on - strand, within Dshi_0376at 359.528 kb on - strand, within Dshi_0376at 359.554 kb on + strand, within Dshi_0376at 359.584 kb on - strand, within Dshi_0376at 359.597 kb on - strand, within Dshi_0376at 359.599 kb on + strand, within Dshi_0376at 359.607 kb on - strand, within Dshi_0376at 359.680 kb on - strand, within Dshi_0376at 359.787 kb on + strand, within Dshi_0376at 359.802 kb on + strand, within Dshi_0376at 359.922 kb on - strand, within Dshi_0376

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.1 mM
remove
357,160 - Dshi_0373 0.65 +0.9
357,219 - Dshi_0373 0.68 -0.3
357,260 + Dshi_0373 0.70 +1.5
357,285 + Dshi_0373 0.72 -0.3
357,292 + Dshi_0373 0.72 -0.1
357,293 - Dshi_0373 0.72 -0.1
357,533 + Dshi_0373 0.84 -0.2
357,645 + Dshi_0373 0.90 +0.1
357,647 + +0.3
357,647 + -1.0
357,766 + -0.4
357,766 + +0.1
357,853 + -0.7
357,866 - +0.5
357,967 + Dshi_0374 0.25 +0.1
358,281 - Dshi_0375 0.16 -0.4
358,415 - Dshi_0375 0.32 -0.1
358,437 + Dshi_0375 0.35 -0.8
358,500 + Dshi_0375 0.42 -1.7
358,538 + Dshi_0375 0.47 +0.1
358,538 + Dshi_0375 0.47 +0.2
358,690 - Dshi_0375 0.65 -0.7
358,695 - Dshi_0375 0.66 -2.3
358,721 - Dshi_0375 0.69 -1.7
358,836 + Dshi_0375 0.83 -0.1
358,850 + Dshi_0375 0.85 -0.7
358,858 - Dshi_0375 0.86 -0.3
358,869 + Dshi_0375 0.87 -0.7
358,952 + -0.1
359,034 - -0.4
359,037 + -0.6
359,090 + -0.1
359,090 + -1.0
359,097 + +1.2
359,097 + -0.4
359,097 + +0.4
359,097 + +0.7
359,097 + -1.4
359,097 + +0.7
359,105 - -1.2
359,119 + +0.9
359,127 - -1.7
359,439 - Dshi_0376 0.32 -0.7
359,523 - Dshi_0376 0.41 +1.2
359,528 - Dshi_0376 0.41 -0.1
359,554 + Dshi_0376 0.44 +0.0
359,584 - Dshi_0376 0.47 +2.9
359,597 - Dshi_0376 0.48 -0.3
359,599 + Dshi_0376 0.49 +2.0
359,607 - Dshi_0376 0.49 +0.9
359,680 - Dshi_0376 0.57 +0.1
359,787 + Dshi_0376 0.68 +2.5
359,802 + Dshi_0376 0.69 +0.1
359,922 - Dshi_0376 0.81 +0.2

Or see this region's nucleotide sequence