Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0649 and Ga0059261_0650 overlap by 1 nucleotides Ga0059261_0650 and Ga0059261_0651 are separated by 107 nucleotides Ga0059261_0651 and Ga0059261_0652 overlap by 1 nucleotides
Ga0059261_0649: Ga0059261_0649 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 689,386 to 690,795
_0649
Ga0059261_0650: Ga0059261_0650 - Negative regulator of beta-lactamase expression, at 690,795 to 691,502
_0650
Ga0059261_0651: Ga0059261_0651 - Methylase of chemotaxis methyl-accepting proteins, at 691,610 to 692,467
_0651
Ga0059261_0652: Ga0059261_0652 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 692,467 to 693,528
_0652
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.006 kb on - strand, within Ga0059261_0649 at 690.095 kb on + strand, within Ga0059261_0649 at 690.095 kb on + strand, within Ga0059261_0649 at 690.096 kb on - strand, within Ga0059261_0649 at 690.096 kb on - strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.461 kb on - strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.760 kb on - strand at 690.934 kb on + strand, within Ga0059261_0650 at 691.411 kb on + strand, within Ga0059261_0650 at 691.411 kb on + strand, within Ga0059261_0650 at 691.412 kb on - strand, within Ga0059261_0650 at 691.412 kb on - strand, within Ga0059261_0650 at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.654 kb on - strand at 691.654 kb on - strand at 691.778 kb on - strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.314 kb on + strand, within Ga0059261_0651 at 692.314 kb on + strand, within Ga0059261_0651 at 692.315 kb on - strand, within Ga0059261_0651 at 692.315 kb on - strand, within Ga0059261_0651
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 690,005 + Ga0059261_0649 0.44 -1.6 690,005 + Ga0059261_0649 0.44 -0.9 690,005 + Ga0059261_0649 0.44 -0.7 690,005 + Ga0059261_0649 0.44 -0.3 690,006 - Ga0059261_0649 0.44 -0.0 690,095 + Ga0059261_0649 0.50 -0.0 690,095 + Ga0059261_0649 0.50 -0.5 690,096 - Ga0059261_0649 0.50 -0.4 690,096 - Ga0059261_0649 0.50 +0.1 690,459 + Ga0059261_0649 0.76 -0.0 690,459 + Ga0059261_0649 0.76 +0.1 690,459 + Ga0059261_0649 0.76 +1.1 690,459 + Ga0059261_0649 0.76 +0.6 690,459 + Ga0059261_0649 0.76 +0.5 690,459 + Ga0059261_0649 0.76 -0.6 690,459 + Ga0059261_0649 0.76 -0.4 690,459 + Ga0059261_0649 0.76 +0.3 690,459 + Ga0059261_0649 0.76 +0.2 690,460 - Ga0059261_0649 0.76 -0.4 690,460 - Ga0059261_0649 0.76 -0.6 690,460 - Ga0059261_0649 0.76 +0.3 690,460 - Ga0059261_0649 0.76 +0.2 690,460 - Ga0059261_0649 0.76 -0.2 690,460 - Ga0059261_0649 0.76 -0.3 690,460 - Ga0059261_0649 0.76 +0.5 690,460 - Ga0059261_0649 0.76 +0.5 690,460 - Ga0059261_0649 0.76 -0.2 690,461 - Ga0059261_0649 0.76 -0.1 690,590 + Ga0059261_0649 0.85 +0.3 690,590 + Ga0059261_0649 0.85 +0.1 690,590 + Ga0059261_0649 0.85 +0.4 690,590 + Ga0059261_0649 0.85 +1.3 690,591 - Ga0059261_0649 0.85 -0.1 690,591 - Ga0059261_0649 0.85 -0.3 690,591 - Ga0059261_0649 0.85 -0.2 690,591 - Ga0059261_0649 0.85 -0.8 690,591 - Ga0059261_0649 0.85 +0.2 690,760 - +0.2 690,934 + Ga0059261_0650 0.20 -0.5 691,411 + Ga0059261_0650 0.87 -0.7 691,411 + Ga0059261_0650 0.87 -0.5 691,412 - Ga0059261_0650 0.87 -2.2 691,412 - Ga0059261_0650 0.87 -1.2 691,653 + -0.3 691,653 + +0.6 691,653 + +0.4 691,653 + -1.6 691,653 + +0.2 691,654 - +0.6 691,654 - +1.0 691,778 - Ga0059261_0651 0.20 +0.5 691,797 + Ga0059261_0651 0.22 +0.3 691,797 + Ga0059261_0651 0.22 -0.1 691,797 + Ga0059261_0651 0.22 +0.2 691,797 + Ga0059261_0651 0.22 -0.7 691,798 - Ga0059261_0651 0.22 +0.5 691,798 - Ga0059261_0651 0.22 -0.1 691,798 - Ga0059261_0651 0.22 +1.6 692,137 + Ga0059261_0651 0.61 -0.9 692,137 + Ga0059261_0651 0.61 +0.3 692,137 + Ga0059261_0651 0.61 -0.2 692,138 - Ga0059261_0651 0.62 -0.1 692,138 - Ga0059261_0651 0.62 +0.7 692,138 - Ga0059261_0651 0.62 +0.5 692,314 + Ga0059261_0651 0.82 -0.0 692,314 + Ga0059261_0651 0.82 -0.7 692,315 - Ga0059261_0651 0.82 +0.0 692,315 - Ga0059261_0651 0.82 -0.6
Or see this region's nucleotide sequence