Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0523 and Ga0059261_0524 overlap by 8 nucleotides Ga0059261_0524 and Ga0059261_0525 are separated by 160 nucleotides
Ga0059261_0523: Ga0059261_0523 - Uncharacterized protein conserved in bacteria, at 525,905 to 526,960
_0523
Ga0059261_0524: Ga0059261_0524 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 526,953 to 527,627
_0524
Ga0059261_0525: Ga0059261_0525 - Transcriptional regulator, at 527,788 to 528,990
_0525
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1 at 526.229 kb on + strand, within Ga0059261_0523 at 526.326 kb on + strand, within Ga0059261_0523 at 526.326 kb on + strand, within Ga0059261_0523 at 526.327 kb on - strand, within Ga0059261_0523 at 526.583 kb on - strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.734 kb on + strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.735 kb on - strand, within Ga0059261_0523 at 526.773 kb on - strand at 526.905 kb on + strand at 526.906 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.961 kb on - strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 526.999 kb on + strand at 527.350 kb on + strand, within Ga0059261_0524 at 527.351 kb on - strand, within Ga0059261_0524 at 527.492 kb on - strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.506 kb on + strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.507 kb on - strand, within Ga0059261_0524 at 527.591 kb on - strand at 527.610 kb on + strand at 527.610 kb on + strand at 527.658 kb on + strand at 527.659 kb on - strand at 527.687 kb on + strand at 527.687 kb on + strand at 527.688 kb on - strand at 527.691 kb on + strand at 527.691 kb on + strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.692 kb on - strand at 527.742 kb on + strand at 527.779 kb on - strand at 528.025 kb on + strand, within Ga0059261_0525 at 528.026 kb on - strand, within Ga0059261_0525 at 528.197 kb on + strand, within Ga0059261_0525
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 526,229 + Ga0059261_0523 0.31 -0.9 526,326 + Ga0059261_0523 0.40 +0.1 526,326 + Ga0059261_0523 0.40 -0.3 526,327 - Ga0059261_0523 0.40 +1.5 526,583 - Ga0059261_0523 0.64 +0.3 526,734 + Ga0059261_0523 0.79 -0.8 526,734 + Ga0059261_0523 0.79 -0.5 526,734 + Ga0059261_0523 0.79 +0.4 526,734 + Ga0059261_0523 0.79 +0.0 526,734 + Ga0059261_0523 0.79 -0.8 526,735 - Ga0059261_0523 0.79 +0.4 526,735 - Ga0059261_0523 0.79 +0.4 526,735 - Ga0059261_0523 0.79 -0.9 526,735 - Ga0059261_0523 0.79 -0.1 526,735 - Ga0059261_0523 0.79 +0.1 526,735 - Ga0059261_0523 0.79 +0.4 526,735 - Ga0059261_0523 0.79 +0.2 526,735 - Ga0059261_0523 0.79 +0.1 526,735 - Ga0059261_0523 0.79 -0.1 526,773 - +1.1 526,905 + +0.3 526,906 - -0.1 526,961 - -0.6 526,961 - -1.4 526,961 - +0.7 526,961 - +0.1 526,999 + +0.5 526,999 + -0.3 526,999 + -0.1 526,999 + +0.2 526,999 + +0.9 526,999 + +1.3 527,350 + Ga0059261_0524 0.59 +0.1 527,351 - Ga0059261_0524 0.59 -0.0 527,492 - Ga0059261_0524 0.80 +0.3 527,506 + Ga0059261_0524 0.82 -1.4 527,506 + Ga0059261_0524 0.82 +1.1 527,506 + Ga0059261_0524 0.82 -1.1 527,506 + Ga0059261_0524 0.82 -1.9 527,506 + Ga0059261_0524 0.82 -0.3 527,506 + Ga0059261_0524 0.82 +0.1 527,506 + Ga0059261_0524 0.82 -0.4 527,506 + Ga0059261_0524 0.82 +0.1 527,507 - Ga0059261_0524 0.82 -2.4 527,507 - Ga0059261_0524 0.82 -0.6 527,507 - Ga0059261_0524 0.82 +0.3 527,507 - Ga0059261_0524 0.82 -0.2 527,507 - Ga0059261_0524 0.82 +1.1 527,507 - Ga0059261_0524 0.82 -1.0 527,507 - Ga0059261_0524 0.82 -0.4 527,591 - -1.7 527,610 + -1.1 527,610 + +0.5 527,658 + -0.9 527,659 - -0.3 527,687 + -0.7 527,687 + -0.3 527,688 - +0.3 527,691 + +0.9 527,691 + -1.1 527,692 - +0.5 527,692 - -0.4 527,692 - +1.0 527,692 - +0.0 527,692 - +0.1 527,742 + -0.2 527,779 - +0.8 528,025 + Ga0059261_0525 0.20 +1.7 528,026 - Ga0059261_0525 0.20 -0.1 528,197 + Ga0059261_0525 0.34 +0.1
Or see this region's nucleotide sequence