Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01596

Experiment: PYE with Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Cisplatin 0.005 mg/ml
1,715,480	-		CCNA_01594	0.51	+1.6
1,715,482	+		CCNA_01594	0.52	-1.2
1,715,490	-		CCNA_01594	0.52	+0.3
1,715,501	+		CCNA_01594	0.54	+0.4
1,715,504	+		CCNA_01594	0.54	-0.4
1,715,504	+		CCNA_01594	0.54	+0.4
1,715,563	+		CCNA_01594	0.61	-0.6
1,715,640	-		CCNA_01594	0.70	+1.3
1,715,657	+		CCNA_01594	0.72	-0.6
1,715,670	-		CCNA_01594	0.73	+0.4
1,715,814	-		CCNA_01594	0.90	-0.0
1,715,829	-				-0.6
1,715,829	-				+0.5
1,715,842	+				-1.7
1,715,949	+				-0.4
1,715,958	-				+4.0
1,715,987	-				+1.0
1,715,987	-				-0.9
1,715,987	-				-0.1
1,716,089	+		CCNA_01595	0.30	-1.7
1,716,134	+		CCNA_01595	0.39	-1.9
1,716,136	+		CCNA_01595	0.39	-0.1
1,716,212	-		CCNA_01595	0.55	-0.6
1,716,232	+		CCNA_01595	0.59	-0.9
1,716,239	+		CCNA_01595	0.60	-0.3
1,716,240	-		CCNA_01595	0.60	+0.4
1,716,271	-		CCNA_01595	0.67	+1.9
1,716,304	+		CCNA_01595	0.73	-1.1
1,716,304	+		CCNA_01595	0.73	+0.4
1,716,304	+		CCNA_01595	0.73	+1.4
1,716,312	-		CCNA_01595	0.75	-1.7
1,716,349	-		CCNA_01595	0.82	-2.0
1,716,358	+		CCNA_01595	0.84	-2.8
1,716,358	+		CCNA_01595	0.84	-2.5
1,716,358	+		CCNA_01595	0.84	-0.1
1,716,366	-		CCNA_01595	0.86	-0.7
1,716,366	-		CCNA_01595	0.86	-0.1
1,716,366	-		CCNA_01595	0.86	+0.4
1,716,375	-		CCNA_01595	0.88	+1.4
1,716,406	-				+1.2
1,716,406	-				+2.0
1,716,406	-				-1.6
1,716,406	-				+0.9
1,716,406	-				+2.4
1,716,406	-				+0.3
1,716,406	-				+0.3
1,716,408	+				+1.0
1,716,408	+				+1.0
1,716,416	-				+0.6
1,716,435	+				-1.6
1,716,438	-				+1.4
1,716,448	-				+1.6
1,716,471	+				-1.5
1,716,476	+				-0.6
1,716,484	-				+0.0
1,716,484	-				+0.6
1,716,529	-				-2.4
1,716,559	-				-3.2
1,716,568	-				-0.6
1,716,601	+				-0.1
1,716,612	+				-3.1
1,716,677	-				-5.4
1,716,691	-				-3.4
1,716,708	-				-4.1
1,716,746	+		CCNA_01596	0.11	-1.4
1,716,746	-		CCNA_01596	0.11	-3.4
1,716,754	-				+1.4
1,716,778	+		CCNA_01596	0.12	-2.0
1,716,785	-		CCNA_01596	0.13	-3.6
1,716,955	-		CCNA_01596	0.20	-0.9
1,716,960	-		CCNA_01596	0.20	-2.6
1,717,013	-		CCNA_01596	0.22	-1.7
1,717,120	+		CCNA_01596	0.27	+2.4
1,717,128	-		CCNA_01596	0.27	-2.5
1,717,348	-		CCNA_01596	0.36	+1.4
1,717,703	-		CCNA_01596	0.51	-3.7
1,717,806	-		CCNA_01596	0.55	-0.9
1,717,876	-		CCNA_01596	0.58	-2.1
1,718,667	-				-0.1
1,718,765	-				-1.4
1,718,770	-				-4.1
1,718,809	+				-0.1
1,718,818	-				-0.9
1,718,828	-				-2.6
1,718,845	-				+2.4
1,718,884	+				-3.1
1,718,922	+				-0.1
1,718,924	+				-0.6
1,718,933	-				-0.7
1,718,942	+				-0.4
1,718,969	+				-1.4
1,718,975	-				-0.6
1,718,987	-				+0.7
1,719,015	-		CCNA_01597	0.13	+0.1
1,719,019	+		CCNA_01597	0.15	-0.1
1,719,022	-		CCNA_01597	0.16	-1.9
1,719,027	-		CCNA_01597	0.18	-0.6
1,719,027	-		CCNA_01597	0.18	-0.6
1,719,041	-		CCNA_01597	0.24	+0.3
1,719,100	+		CCNA_01597	0.48	-1.4
1,719,108	-		CCNA_01597	0.51	-0.4
1,719,140	+		CCNA_01597	0.64	-1.1
1,719,142	+		CCNA_01597	0.65	-0.1
1,719,143	+		CCNA_01597	0.65	-0.1
1,719,152	+		CCNA_01597	0.69	-2.1
1,719,152	+		CCNA_01597	0.69	-1.1
1,719,160	-		CCNA_01597	0.72	+2.4
1,719,174	+				+1.4
1,719,174	-		CCNA_01597	0.78	+1.7
1,719,179	+		CCNA_01597	0.80	+0.7
1,719,224	+				-1.1
1,719,232	-				+0.4
1,719,238	+				-0.6
1,719,244	-				-2.3
1,719,259	-				+0.9
1,719,260	+				-0.1
1,719,260	+				+0.4
1,719,322	+				+0.4
1,719,322	+				-1.4
1,719,325	-				-0.6
1,719,331	-				+0.4
1,719,345	-				-0.1
1,719,345	-				-1.1
1,719,345	-				+0.1
1,719,350	-				-2.1
1,719,411	+				-1.6
1,719,432	+				-0.6
1,719,439	-				+2.4
1,719,447	+				-0.9
1,719,453	+				-0.1
1,719,465	+				-3.0
1,719,470	+				+1.4
1,719,518	+		CCNA_01598	0.11	+0.9
1,719,518	+		CCNA_01598	0.11	-0.9
1,719,518	+		CCNA_01598	0.11	+2.4
1,719,518	+		CCNA_01598	0.11	-0.6
1,719,518	+		CCNA_01598	0.11	-0.6
1,719,526	-		CCNA_01598	0.12	-1.6
1,719,526	-		CCNA_01598	0.12	-1.1
1,719,535	+		CCNA_01598	0.12	+0.7
1,719,543	-		CCNA_01598	0.13	-2.0
1,719,543	-		CCNA_01598	0.13	-0.6
1,719,581	-		CCNA_01598	0.15	-1.4
1,719,608	-		CCNA_01598	0.17	+0.9
1,719,610	+		CCNA_01598	0.17	-0.5
1,719,618	-		CCNA_01598	0.18	+0.1
1,719,620	+		CCNA_01598	0.18	-1.6
1,719,625	+		CCNA_01598	0.18	-1.3
1,719,743	-		CCNA_01598	0.26	+0.4
1,719,755	+		CCNA_01598	0.27	-0.2
1,719,755	+		CCNA_01598	0.27	-1.7
1,719,755	+		CCNA_01598	0.27	-1.4
1,719,859	+		CCNA_01598	0.34	-0.6