Experiment: PYE with Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00856 and CCNA_00857 are separated by 171 nucleotides CCNA_00857 and CCNA_00858 are separated by 366 nucleotides
CCNA_00856: CCNA_00856 - beta-xylosidase, at 931,733 to 933,355
_00856
CCNA_00857: CCNA_00857 - D-xylose transporter <small>(from data)</small>, at 933,527 to 934,963
_00857
CCNA_00858: CCNA_00858 - TonB-dependent receptor, at 935,330 to 937,543
_00858
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 932.530 kb on + strand, within CCNA_00856 at 932.619 kb on - strand, within CCNA_00856 at 932.627 kb on - strand, within CCNA_00856 at 932.667 kb on + strand, within CCNA_00856 at 932.667 kb on + strand, within CCNA_00856 at 932.668 kb on + strand, within CCNA_00856 at 932.690 kb on - strand, within CCNA_00856 at 932.698 kb on - strand, within CCNA_00856 at 932.715 kb on - strand, within CCNA_00856 at 932.725 kb on - strand, within CCNA_00856 at 932.725 kb on - strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.727 kb on + strand, within CCNA_00856 at 932.735 kb on - strand, within CCNA_00856 at 932.754 kb on + strand, within CCNA_00856 at 932.770 kb on + strand, within CCNA_00856 at 932.783 kb on - strand, within CCNA_00856 at 932.842 kb on + strand, within CCNA_00856 at 932.844 kb on - strand, within CCNA_00856 at 932.845 kb on + strand, within CCNA_00856 at 932.850 kb on - strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.860 kb on + strand, within CCNA_00856 at 932.867 kb on - strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.875 kb on + strand, within CCNA_00856 at 932.880 kb on + strand, within CCNA_00856 at 932.880 kb on + strand, within CCNA_00856 at 932.883 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.888 kb on - strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.904 kb on + strand, within CCNA_00856 at 932.912 kb on - strand, within CCNA_00856 at 932.981 kb on + strand, within CCNA_00856 at 932.989 kb on - strand, within CCNA_00856 at 933.009 kb on - strand, within CCNA_00856 at 933.027 kb on - strand, within CCNA_00856 at 933.049 kb on + strand, within CCNA_00856 at 933.057 kb on - strand, within CCNA_00856 at 933.084 kb on + strand, within CCNA_00856 at 933.103 kb on - strand, within CCNA_00856 at 933.105 kb on + strand, within CCNA_00856 at 933.110 kb on - strand, within CCNA_00856 at 933.112 kb on + strand, within CCNA_00856 at 933.115 kb on - strand, within CCNA_00856 at 933.138 kb on - strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.139 kb on + strand, within CCNA_00856 at 933.160 kb on + strand, within CCNA_00856 at 933.173 kb on - strand, within CCNA_00856 at 933.174 kb on - strand, within CCNA_00856 at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.195 kb on + strand at 933.203 kb on - strand at 933.203 kb on - strand at 933.207 kb on + strand at 933.208 kb on - strand at 933.222 kb on + strand at 933.222 kb on + strand at 933.230 kb on - strand at 933.237 kb on + strand at 933.245 kb on - strand at 933.245 kb on - strand at 933.271 kb on - strand at 933.301 kb on + strand at 933.311 kb on + strand at 933.311 kb on + strand at 933.341 kb on - strand at 933.365 kb on + strand at 933.365 kb on + strand at 933.370 kb on + strand at 933.373 kb on - strand at 933.373 kb on - strand at 933.385 kb on - strand at 933.462 kb on + strand at 933.469 kb on + strand at 933.515 kb on + strand at 933.530 kb on + strand at 933.533 kb on - strand at 933.533 kb on - strand at 933.548 kb on - strand at 933.618 kb on - strand at 933.628 kb on - strand at 933.629 kb on - strand at 933.639 kb on - strand at 933.662 kb on - strand at 933.694 kb on + strand, within CCNA_00857 at 933.702 kb on - strand, within CCNA_00857 at 933.710 kb on + strand, within CCNA_00857 at 933.723 kb on - strand, within CCNA_00857 at 933.723 kb on - strand, within CCNA_00857 at 933.762 kb on - strand, within CCNA_00857 at 933.775 kb on - strand, within CCNA_00857 at 933.792 kb on - strand, within CCNA_00857 at 933.798 kb on + strand, within CCNA_00857 at 933.798 kb on + strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.806 kb on - strand, within CCNA_00857 at 933.847 kb on + strand, within CCNA_00857 at 933.855 kb on - strand, within CCNA_00857 at 933.856 kb on - strand, within CCNA_00857 at 933.918 kb on - strand, within CCNA_00857 at 933.956 kb on - strand, within CCNA_00857 at 933.986 kb on + strand, within CCNA_00857 at 933.990 kb on + strand, within CCNA_00857 at 933.994 kb on - strand, within CCNA_00857 at 934.014 kb on + strand, within CCNA_00857 at 934.014 kb on + strand, within CCNA_00857 at 934.022 kb on - strand, within CCNA_00857 at 934.039 kb on + strand, within CCNA_00857 at 934.058 kb on + strand, within CCNA_00857 at 934.058 kb on + strand, within CCNA_00857 at 934.063 kb on + strand, within CCNA_00857 at 934.063 kb on + strand, within CCNA_00857 at 934.066 kb on - strand, within CCNA_00857 at 934.124 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.129 kb on - strand, within CCNA_00857 at 934.183 kb on + strand, within CCNA_00857 at 934.221 kb on + strand, within CCNA_00857 at 934.239 kb on - strand, within CCNA_00857 at 934.248 kb on + strand, within CCNA_00857 at 934.272 kb on + strand, within CCNA_00857 at 934.272 kb on + strand, within CCNA_00857 at 934.275 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.280 kb on - strand, within CCNA_00857 at 934.287 kb on + strand, within CCNA_00857 at 934.287 kb on + strand, within CCNA_00857 at 934.336 kb on - strand, within CCNA_00857 at 934.409 kb on + strand, within CCNA_00857 at 934.417 kb on - strand, within CCNA_00857 at 934.442 kb on - strand, within CCNA_00857 at 934.452 kb on - strand, within CCNA_00857 at 934.452 kb on - strand, within CCNA_00857 at 934.472 kb on - strand, within CCNA_00857 at 934.474 kb on + strand, within CCNA_00857 at 934.477 kb on - strand, within CCNA_00857 at 934.503 kb on + strand, within CCNA_00857 at 934.503 kb on + strand, within CCNA_00857 at 934.538 kb on - strand, within CCNA_00857 at 934.544 kb on + strand, within CCNA_00857 at 934.559 kb on - strand, within CCNA_00857 at 934.630 kb on - strand, within CCNA_00857 at 934.661 kb on + strand, within CCNA_00857 at 934.669 kb on - strand, within CCNA_00857 at 934.684 kb on - strand, within CCNA_00857 at 934.684 kb on - strand, within CCNA_00857 at 934.735 kb on - strand, within CCNA_00857 at 934.745 kb on + strand, within CCNA_00857 at 934.753 kb on - strand, within CCNA_00857 at 934.753 kb on - strand at 934.781 kb on - strand, within CCNA_00857 at 934.781 kb on - strand, within CCNA_00857 at 934.797 kb on - strand, within CCNA_00857 at 934.895 kb on + strand at 934.907 kb on - strand at 934.907 kb on - strand at 934.907 kb on - strand at 934.958 kb on + strand at 934.958 kb on + strand at 934.965 kb on + strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.966 kb on - strand at 934.983 kb on - strand at 935.003 kb on - strand at 935.012 kb on - strand at 935.038 kb on + strand at 935.038 kb on + strand at 935.109 kb on - strand at 935.120 kb on + strand at 935.143 kb on + strand at 935.158 kb on - strand at 935.166 kb on - strand at 935.264 kb on - strand at 935.270 kb on + strand at 935.278 kb on - strand at 935.278 kb on - strand at 935.278 kb on - strand at 935.297 kb on + strand at 935.316 kb on + strand at 935.316 kb on + strand at 935.358 kb on + strand at 935.390 kb on - strand at 935.390 kb on - strand at 935.392 kb on + strand at 935.400 kb on - strand at 935.407 kb on + strand at 935.408 kb on + strand at 935.415 kb on - strand at 935.416 kb on - strand at 935.416 kb on - strand at 935.418 kb on + strand at 935.423 kb on + strand at 935.423 kb on + strand at 935.426 kb on - strand at 935.431 kb on - strand at 935.433 kb on + strand at 935.437 kb on + strand at 935.445 kb on - strand at 935.447 kb on + strand at 935.458 kb on + strand at 935.458 kb on + strand at 935.458 kb on + strand at 935.466 kb on - strand at 935.466 kb on - strand at 935.488 kb on - strand at 935.574 kb on - strand, within CCNA_00858 at 935.586 kb on + strand, within CCNA_00858 at 935.599 kb on - strand, within CCNA_00858 at 935.609 kb on - strand, within CCNA_00858 at 935.620 kb on - strand, within CCNA_00858 at 935.624 kb on - strand, within CCNA_00858 at 935.629 kb on + strand, within CCNA_00858 at 935.629 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.634 kb on + strand, within CCNA_00858 at 935.637 kb on - strand, within CCNA_00858 at 935.642 kb on - strand, within CCNA_00858 at 935.690 kb on + strand, within CCNA_00858 at 935.695 kb on + strand, within CCNA_00858 at 935.703 kb on - strand, within CCNA_00858 at 935.739 kb on - strand at 935.767 kb on + strand, within CCNA_00858 at 935.811 kb on + strand, within CCNA_00858 at 935.816 kb on + strand, within CCNA_00858 at 935.819 kb on - strand, within CCNA_00858 at 935.834 kb on + strand, within CCNA_00858 at 935.855 kb on + strand, within CCNA_00858 at 935.928 kb on + strand, within CCNA_00858 at 935.932 kb on - strand, within CCNA_00858 at 935.936 kb on - strand, within CCNA_00858
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml remove 932,530 + CCNA_00856 0.49 +0.3 932,619 - CCNA_00856 0.55 -1.9 932,627 - CCNA_00856 0.55 +0.9 932,667 + CCNA_00856 0.58 -1.1 932,667 + CCNA_00856 0.58 -0.8 932,668 + CCNA_00856 0.58 +1.2 932,690 - CCNA_00856 0.59 +0.2 932,698 - CCNA_00856 0.59 -1.5 932,715 - CCNA_00856 0.61 +1.7 932,725 - CCNA_00856 0.61 -0.6 932,725 - CCNA_00856 0.61 -1.1 932,727 + CCNA_00856 0.61 -1.5 932,727 + CCNA_00856 0.61 +0.0 932,727 + CCNA_00856 0.61 +0.6 932,735 - CCNA_00856 0.62 -0.8 932,754 + CCNA_00856 0.63 +0.6 932,770 + CCNA_00856 0.64 -2.8 932,783 - CCNA_00856 0.65 -0.8 932,842 + CCNA_00856 0.68 -0.8 932,844 - CCNA_00856 0.68 +1.8 932,845 + CCNA_00856 0.69 -1.4 932,850 - CCNA_00856 0.69 -1.8 932,860 + CCNA_00856 0.69 -0.1 932,860 + CCNA_00856 0.69 -1.1 932,860 + CCNA_00856 0.69 -2.9 932,867 - CCNA_00856 0.70 -1.6 932,875 + CCNA_00856 0.70 +0.2 932,875 + CCNA_00856 0.70 +1.8 932,875 + CCNA_00856 0.70 -2.4 932,875 + CCNA_00856 0.70 +0.2 932,875 + CCNA_00856 0.70 -1.1 932,880 + CCNA_00856 0.71 -1.4 932,880 + CCNA_00856 0.71 -2.1 932,883 - CCNA_00856 0.71 +2.5 932,888 - CCNA_00856 0.71 -1.8 932,888 - CCNA_00856 0.71 +0.6 932,888 - CCNA_00856 0.71 -0.2 932,888 - CCNA_00856 0.71 -0.9 932,904 + CCNA_00856 0.72 +0.4 932,904 + CCNA_00856 0.72 +1.4 932,904 + CCNA_00856 0.72 +1.0 932,904 + CCNA_00856 0.72 +1.5 932,904 + CCNA_00856 0.72 +1.0 932,912 - CCNA_00856 0.73 -0.9 932,981 + CCNA_00856 0.77 +1.7 932,989 - CCNA_00856 0.77 -0.7 933,009 - CCNA_00856 0.79 -1.4 933,027 - CCNA_00856 0.80 -0.1 933,049 + CCNA_00856 0.81 -0.9 933,057 - CCNA_00856 0.82 -0.8 933,084 + CCNA_00856 0.83 -1.4 933,103 - CCNA_00856 0.84 +1.6 933,105 + CCNA_00856 0.85 +3.4 933,110 - CCNA_00856 0.85 +0.5 933,112 + CCNA_00856 0.85 -1.1 933,115 - CCNA_00856 0.85 +0.6 933,138 - CCNA_00856 0.87 +0.2 933,139 + CCNA_00856 0.87 +0.7 933,139 + CCNA_00856 0.87 -0.6 933,139 + CCNA_00856 0.87 +0.8 933,160 + CCNA_00856 0.88 +0.2 933,173 - CCNA_00856 0.89 +0.2 933,174 - CCNA_00856 0.89 -1.1 933,195 + +0.9 933,195 + +0.2 933,195 + -2.8 933,195 + -1.4 933,195 + +1.2 933,195 + -0.4 933,203 - -0.4 933,203 - -1.8 933,207 + +0.5 933,208 - -0.8 933,222 + +0.2 933,222 + -0.4 933,230 - +0.2 933,237 + +0.2 933,245 - -0.4 933,245 - -2.5 933,271 - -2.7 933,301 + +1.2 933,311 + -1.1 933,311 + +1.2 933,341 - +0.2 933,365 + -0.5 933,365 + +0.9 933,370 + -0.0 933,373 - +0.5 933,373 - +0.6 933,385 - -0.7 933,462 + +0.0 933,469 + +1.2 933,515 + -2.4 933,530 + -0.8 933,533 - -0.2 933,533 - +0.5 933,548 - +1.0 933,618 - -0.6 933,628 - +0.5 933,629 - +0.3 933,639 - +0.0 933,662 - +0.2 933,694 + CCNA_00857 0.12 -1.6 933,702 - CCNA_00857 0.12 +1.3 933,710 + CCNA_00857 0.13 +0.2 933,723 - CCNA_00857 0.14 +1.0 933,723 - CCNA_00857 0.14 +2.2 933,762 - CCNA_00857 0.16 +0.1 933,775 - CCNA_00857 0.17 +0.8 933,792 - CCNA_00857 0.18 -1.0 933,798 + CCNA_00857 0.19 -1.6 933,798 + CCNA_00857 0.19 -2.8 933,806 - CCNA_00857 0.19 +0.4 933,806 - CCNA_00857 0.19 +1.2 933,806 - CCNA_00857 0.19 +0.9 933,847 + CCNA_00857 0.22 -1.6 933,855 - CCNA_00857 0.23 +3.2 933,856 - CCNA_00857 0.23 +0.1 933,918 - CCNA_00857 0.27 -0.1 933,956 - CCNA_00857 0.30 -0.3 933,986 + CCNA_00857 0.32 +1.5 933,990 + CCNA_00857 0.32 +0.2 933,994 - CCNA_00857 0.32 +1.2 934,014 + CCNA_00857 0.34 -2.1 934,014 + CCNA_00857 0.34 -1.1 934,022 - CCNA_00857 0.34 -1.7 934,039 + CCNA_00857 0.36 +1.8 934,058 + CCNA_00857 0.37 -2.6 934,058 + CCNA_00857 0.37 -2.2 934,063 + CCNA_00857 0.37 -2.6 934,063 + CCNA_00857 0.37 -0.8 934,066 - CCNA_00857 0.38 +0.9 934,124 - CCNA_00857 0.42 +0.1 934,129 - CCNA_00857 0.42 -1.4 934,129 - CCNA_00857 0.42 +0.3 934,129 - CCNA_00857 0.42 -1.9 934,129 - CCNA_00857 0.42 +0.7 934,183 + CCNA_00857 0.46 +0.2 934,221 + CCNA_00857 0.48 -2.9 934,239 - CCNA_00857 0.50 -1.1 934,248 + CCNA_00857 0.50 +0.6 934,272 + CCNA_00857 0.52 +1.2 934,272 + CCNA_00857 0.52 -3.0 934,275 - CCNA_00857 0.52 +0.5 934,280 - CCNA_00857 0.52 +0.2 934,280 - CCNA_00857 0.52 +1.2 934,280 - CCNA_00857 0.52 -1.1 934,287 + CCNA_00857 0.53 -1.8 934,287 + CCNA_00857 0.53 -1.1 934,336 - CCNA_00857 0.56 -0.8 934,409 + CCNA_00857 0.61 +1.2 934,417 - CCNA_00857 0.62 +0.7 934,442 - CCNA_00857 0.64 -1.0 934,452 - CCNA_00857 0.64 -1.1 934,452 - CCNA_00857 0.64 +0.7 934,472 - CCNA_00857 0.66 +0.2 934,474 + CCNA_00857 0.66 -1.4 934,477 - CCNA_00857 0.66 +0.6 934,503 + CCNA_00857 0.68 -0.4 934,503 + CCNA_00857 0.68 +2.2 934,538 - CCNA_00857 0.70 +0.1 934,544 + CCNA_00857 0.71 +0.2 934,559 - CCNA_00857 0.72 -0.4 934,630 - CCNA_00857 0.77 +1.6 934,661 + CCNA_00857 0.79 -1.4 934,669 - CCNA_00857 0.79 -0.4 934,684 - CCNA_00857 0.81 +0.4 934,684 - CCNA_00857 0.81 -1.1 934,735 - CCNA_00857 0.84 -1.1 934,745 + CCNA_00857 0.85 -2.2 934,753 - CCNA_00857 0.85 +0.4 934,753 - +1.2 934,781 - CCNA_00857 0.87 +0.4 934,781 - CCNA_00857 0.87 -1.2 934,797 - CCNA_00857 0.88 +0.9 934,895 + -0.8 934,907 - -1.4 934,907 - +0.0 934,907 - +0.5 934,958 + -1.6 934,958 + -1.4 934,965 + -2.4 934,966 - -0.7 934,966 - -1.0 934,966 - -0.1 934,966 - +0.7 934,966 - -0.1 934,966 - +1.2 934,983 - -1.9 935,003 - -2.6 935,012 - +0.4 935,038 + +0.2 935,038 + -0.1 935,109 - +0.2 935,120 + +1.2 935,143 + +1.2 935,158 - -0.2 935,166 - +1.0 935,264 - +0.0 935,270 + +0.1 935,278 - +1.2 935,278 - -1.0 935,278 - -2.8 935,297 + -0.4 935,316 + +1.2 935,316 + +0.9 935,358 + +1.0 935,390 - -0.4 935,390 - -1.9 935,392 + +1.4 935,400 - +0.4 935,407 + +1.3 935,408 + +0.6 935,415 - -1.8 935,416 - -1.6 935,416 - -1.1 935,418 + +0.7 935,423 + +0.8 935,423 + +0.9 935,426 - +0.2 935,431 - -2.4 935,433 + +1.7 935,437 + +1.0 935,445 - -0.2 935,447 + +0.1 935,458 + +0.9 935,458 + +0.1 935,458 + +1.4 935,466 - -1.1 935,466 - +1.5 935,488 - -1.6 935,574 - CCNA_00858 0.11 -1.4 935,586 + CCNA_00858 0.12 +0.3 935,599 - CCNA_00858 0.12 -0.7 935,609 - CCNA_00858 0.13 -2.2 935,620 - CCNA_00858 0.13 -1.4 935,624 - CCNA_00858 0.13 -0.8 935,629 + CCNA_00858 0.14 +1.0 935,629 + CCNA_00858 0.14 +1.1 935,634 + CCNA_00858 0.14 +1.2 935,634 + CCNA_00858 0.14 +1.2 935,634 + CCNA_00858 0.14 +0.0 935,637 - CCNA_00858 0.14 -1.1 935,642 - CCNA_00858 0.14 +0.6 935,690 + CCNA_00858 0.16 +0.6 935,695 + CCNA_00858 0.16 +0.9 935,703 - CCNA_00858 0.17 +0.3 935,739 - +2.2 935,767 + CCNA_00858 0.20 +1.2 935,811 + CCNA_00858 0.22 +0.6 935,816 + CCNA_00858 0.22 -2.4 935,819 - CCNA_00858 0.22 -1.1 935,834 + CCNA_00858 0.23 -0.2 935,855 + CCNA_00858 0.24 +0.3 935,928 + CCNA_00858 0.27 +0.7 935,932 - CCNA_00858 0.27 -2.8 935,936 - CCNA_00858 0.27 -0.8
Or see this region's nucleotide sequence