Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00349

Experiment: PYE with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00348 and CCNA_00349 are separated by 173 nucleotidesCCNA_00349 and CCNA_00350 overlap by 4 nucleotidesCCNA_00350 and CCNA_00351 are separated by 125 nucleotides CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221 _00348 CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309 _00349 CCNA_00350: CCNA_00350 - hypothetical protein, at 365,306 to 365,986 _00350 CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271 _00351 Position (kb) 364 365 366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 363.401 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.433 kb on + strand, within CCNA_00348at 363.441 kb on - strand, within CCNA_00348at 363.446 kb on - strand, within CCNA_00348at 363.446 kb on - strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.460 kb on + strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.468 kb on - strand, within CCNA_00348at 363.475 kb on + strand, within CCNA_00348at 363.475 kb on + strand, within CCNA_00348at 363.478 kb on - strand, within CCNA_00348at 363.478 kb on - strand, within CCNA_00348at 363.483 kb on - strand, within CCNA_00348at 363.487 kb on + strand, within CCNA_00348at 363.490 kb on - strand, within CCNA_00348at 363.495 kb on - strand, within CCNA_00348at 363.532 kb on + strand, within CCNA_00348at 363.535 kb on - strand, within CCNA_00348at 363.540 kb on - strand, within CCNA_00348at 363.547 kb on + strand, within CCNA_00348at 363.554 kb on + strand, within CCNA_00348at 363.554 kb on + strand, within CCNA_00348at 363.608 kb on + strand, within CCNA_00348at 363.613 kb on + strand, within CCNA_00348at 363.614 kb on - strand, within CCNA_00348at 363.616 kb on - strand, within CCNA_00348at 363.621 kb on - strand, within CCNA_00348at 363.663 kb on - strand, within CCNA_00348at 363.725 kb on + strand, within CCNA_00348at 363.725 kb on + strand, within CCNA_00348at 363.728 kb on - strand, within CCNA_00348at 363.733 kb on - strand, within CCNA_00348at 363.779 kb on + strand, within CCNA_00348at 363.822 kb on + strand, within CCNA_00348at 363.830 kb on - strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.844 kb on + strand, within CCNA_00348at 363.845 kb on + strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.852 kb on - strand, within CCNA_00348at 363.853 kb on - strand, within CCNA_00348at 363.856 kb on + strand, within CCNA_00348at 363.856 kb on + strand, within CCNA_00348at 363.866 kb on + strand, within CCNA_00348at 363.908 kb on - strand, within CCNA_00348at 363.908 kb on - strand, within CCNA_00348at 363.919 kb on - strand, within CCNA_00348at 363.940 kb on + strand, within CCNA_00348at 363.950 kb on - strand, within CCNA_00348at 363.962 kb on + strand, within CCNA_00348at 363.975 kb on - strand, within CCNA_00348at 363.981 kb on + strand, within CCNA_00348at 363.989 kb on - strand, within CCNA_00348at 363.999 kb on - strand, within CCNA_00348at 364.024 kb on + strandat 364.053 kb on - strandat 364.053 kb on - strandat 364.067 kb on - strandat 364.124 kb on - strandat 364.136 kb on + strandat 364.157 kb on + strandat 364.276 kb on + strandat 364.283 kb on + strandat 364.312 kb on - strandat 364.339 kb on + strandat 364.339 kb on + strandat 364.345 kb on - strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.468 kb on + strandat 364.481 kb on - strandat 364.493 kb on + strand, within CCNA_00349at 364.494 kb on + strand, within CCNA_00349at 364.504 kb on + strand, within CCNA_00349at 364.535 kb on - strand, within CCNA_00349at 364.557 kb on - strand, within CCNA_00349at 364.572 kb on - strand, within CCNA_00349at 364.581 kb on - strand, within CCNA_00349at 364.622 kb on - strand, within CCNA_00349at 364.630 kb on + strand, within CCNA_00349at 364.638 kb on - strand, within CCNA_00349at 364.654 kb on + strand, within CCNA_00349at 364.672 kb on - strand, within CCNA_00349at 364.687 kb on + strand, within CCNA_00349at 364.707 kb on + strand, within CCNA_00349at 364.729 kb on + strand, within CCNA_00349at 364.747 kb on + strand, within CCNA_00349at 364.836 kb on - strand, within CCNA_00349at 364.838 kb on + strand, within CCNA_00349at 364.843 kb on + strand, within CCNA_00349at 364.846 kb on - strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.905 kb on + strand, within CCNA_00349at 364.913 kb on - strand, within CCNA_00349at 364.977 kb on - strand, within CCNA_00349at 365.003 kb on - strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.063 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.092 kb on - strand, within CCNA_00349at 365.098 kb on - strand, within CCNA_00349at 365.113 kb on - strand, within CCNA_00349at 365.118 kb on - strand, within CCNA_00349at 365.153 kb on - strand, within CCNA_00349at 365.165 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.189 kb on + strand, within CCNA_00349at 365.283 kb on + strandat 365.287 kb on + strandat 365.295 kb on - strandat 365.311 kb on + strandat 365.316 kb on + strandat 365.319 kb on - strandat 365.321 kb on + strandat 365.321 kb on + strandat 365.329 kb on - strandat 365.506 kb on + strand, within CCNA_00350at 365.735 kb on - strand, within CCNA_00350at 365.830 kb on + strand, within CCNA_00350at 366.008 kb on - strandat 366.009 kb on - strandat 366.080 kb on - strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml
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363,401 + CCNA_00348 0.59 -0.4
363,433 + CCNA_00348 0.61 +0.2
363,433 + CCNA_00348 0.61 +1.3
363,433 + CCNA_00348 0.61 +1.7
363,441 - CCNA_00348 0.61 -0.3
363,446 - CCNA_00348 0.61 +1.3
363,446 - CCNA_00348 0.61 -0.3
363,460 + CCNA_00348 0.62 -0.6
363,460 + CCNA_00348 0.62 -0.2
363,460 + CCNA_00348 0.62 +0.0
363,460 + CCNA_00348 0.62 +1.1
363,460 + CCNA_00348 0.62 -1.2
363,460 + CCNA_00348 0.62 -0.7
363,468 - CCNA_00348 0.62 -0.5
363,468 - CCNA_00348 0.62 +0.3
363,468 - CCNA_00348 0.62 +0.7
363,468 - CCNA_00348 0.62 +1.9
363,475 + CCNA_00348 0.63 -1.9
363,475 + CCNA_00348 0.63 -0.6
363,478 - CCNA_00348 0.63 +0.2
363,478 - CCNA_00348 0.63 -1.0
363,483 - CCNA_00348 0.63 +0.0
363,487 + CCNA_00348 0.63 -0.7
363,490 - CCNA_00348 0.63 +0.2
363,495 - CCNA_00348 0.64 -0.1
363,532 + CCNA_00348 0.66 +0.9
363,535 - CCNA_00348 0.66 +0.1
363,540 - CCNA_00348 0.66 -0.6
363,547 + CCNA_00348 0.66 +0.0
363,554 + CCNA_00348 0.67 -0.3
363,554 + CCNA_00348 0.67 -0.3
363,608 + CCNA_00348 0.69 -2.0
363,613 + CCNA_00348 0.70 +0.4
363,614 - CCNA_00348 0.70 +0.1
363,616 - CCNA_00348 0.70 +1.3
363,621 - CCNA_00348 0.70 +0.5
363,663 - CCNA_00348 0.72 +1.0
363,725 + CCNA_00348 0.75 +1.3
363,725 + CCNA_00348 0.75 -2.1
363,728 - CCNA_00348 0.75 +0.9
363,733 - CCNA_00348 0.76 +0.4
363,779 + CCNA_00348 0.78 +0.3
363,822 + CCNA_00348 0.80 +0.0
363,830 - CCNA_00348 0.80 +0.9
363,844 + CCNA_00348 0.81 -3.6
363,844 + CCNA_00348 0.81 -3.6
363,845 + CCNA_00348 0.81 -0.9
363,852 - CCNA_00348 0.82 -1.1
363,852 - CCNA_00348 0.82 -0.2
363,853 - CCNA_00348 0.82 +1.0
363,856 + CCNA_00348 0.82 -2.3
363,856 + CCNA_00348 0.82 -2.9
363,866 + CCNA_00348 0.82 -0.7
363,908 - CCNA_00348 0.84 -0.2
363,908 - CCNA_00348 0.84 -0.0
363,919 - CCNA_00348 0.85 +0.4
363,940 + CCNA_00348 0.86 -1.2
363,950 - CCNA_00348 0.86 +0.2
363,962 + CCNA_00348 0.87 -2.2
363,975 - CCNA_00348 0.88 +0.8
363,981 + CCNA_00348 0.88 -2.3
363,989 - CCNA_00348 0.88 -1.0
363,999 - CCNA_00348 0.89 +0.7
364,024 + +1.0
364,053 - +0.2
364,053 - +2.8
364,067 - +0.5
364,124 - +0.4
364,136 + -1.8
364,157 + +0.0
364,276 + -2.8
364,283 + -1.3
364,312 - -0.2
364,339 + -0.7
364,339 + +0.0
364,345 - -2.5
364,399 + +0.7
364,399 + -0.4
364,407 - -0.1
364,407 - -2.2
364,407 - -0.1
364,407 - -0.7
364,407 - -1.0
364,468 + -1.0
364,481 - +0.0
364,493 + CCNA_00349 0.11 +1.0
364,494 + CCNA_00349 0.11 -1.0
364,504 + CCNA_00349 0.12 -4.7
364,535 - CCNA_00349 0.15 -1.0
364,557 - CCNA_00349 0.18 -2.9
364,572 - CCNA_00349 0.19 -0.6
364,581 - CCNA_00349 0.20 -3.8
364,622 - CCNA_00349 0.25 -3.9
364,630 + CCNA_00349 0.26 -1.8
364,638 - CCNA_00349 0.27 -1.8
364,654 + CCNA_00349 0.28 -2.0
364,672 - CCNA_00349 0.30 -3.0
364,687 + CCNA_00349 0.32 -1.6
364,707 + CCNA_00349 0.34 -2.0
364,729 + CCNA_00349 0.37 -1.3
364,747 + CCNA_00349 0.38 -2.3
364,836 - CCNA_00349 0.48 -2.2
364,838 + CCNA_00349 0.48 -3.0
364,843 + CCNA_00349 0.49 -1.5
364,846 - CCNA_00349 0.49 -4.0
364,857 + CCNA_00349 0.50 -2.0
364,857 + CCNA_00349 0.50 -0.6
364,865 - CCNA_00349 0.51 -2.2
364,865 - CCNA_00349 0.51 -1.0
364,865 - CCNA_00349 0.51 -2.8
364,865 - CCNA_00349 0.51 -2.5
364,905 + CCNA_00349 0.56 -1.6
364,913 - CCNA_00349 0.57 -4.0
364,977 - CCNA_00349 0.64 -1.0
365,003 - CCNA_00349 0.66 -0.6
365,017 + CCNA_00349 0.68 -0.6
365,017 + CCNA_00349 0.68 -1.0
365,063 + CCNA_00349 0.73 -2.2
365,065 + CCNA_00349 0.73 -2.0
365,065 + CCNA_00349 0.73 +0.0
365,073 - CCNA_00349 0.74 -2.2
365,073 - CCNA_00349 0.74 -2.6
365,092 - CCNA_00349 0.76 -1.3
365,098 - CCNA_00349 0.77 -2.8
365,113 - CCNA_00349 0.78 -2.7
365,118 - CCNA_00349 0.79 -3.6
365,153 - CCNA_00349 0.83 -2.2
365,165 + CCNA_00349 0.84 -2.2
365,166 + CCNA_00349 0.84 -1.3
365,166 + CCNA_00349 0.84 -3.1
365,174 - CCNA_00349 0.85 -2.5
365,174 - CCNA_00349 0.85 -1.3
365,189 + CCNA_00349 0.87 -3.2
365,283 + -2.6
365,287 + +1.4
365,295 - -0.3
365,311 + -1.0
365,316 + -3.9
365,319 - +0.1
365,321 + -1.8
365,321 + -1.0
365,329 - -4.3
365,506 + CCNA_00350 0.29 -2.0
365,735 - CCNA_00350 0.63 -1.6
365,830 + CCNA_00350 0.77 -1.8
366,008 - +0.7
366,009 - +0.3
366,080 - -0.4
366,103 + +0.6
366,103 + +0.3
366,103 + -0.6
366,112 + -2.1

Or see this region's nucleotide sequence