Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22500

Experiment: Cobalt chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22495 and AZOBR_RS22500 are separated by 293 nucleotidesAZOBR_RS22500 and AZOBR_RS22505 are separated by 14 nucleotides AZOBR_RS22495: AZOBR_RS22495 - GntR family transcriptional regulator, at 57,746 to 58,432 _RS22495 AZOBR_RS22500: AZOBR_RS22500 - methylmalonate-semialdehyde dehydrogenase, at 58,726 to 60,225 _RS22500 AZOBR_RS22505: AZOBR_RS22505 - omega amino acid--pyruvate aminotransferase, at 60,240 to 61,550 _RS22505 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 57.810 kb on - strandat 57.810 kb on - strandat 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.848 kb on + strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.849 kb on - strand, within AZOBR_RS22495at 57.961 kb on - strand, within AZOBR_RS22495at 57.986 kb on + strand, within AZOBR_RS22495at 57.987 kb on - strand, within AZOBR_RS22495at 58.151 kb on - strand, within AZOBR_RS22495at 58.161 kb on - strand, within AZOBR_RS22495at 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.503 kb on - strandat 58.503 kb on - strandat 58.527 kb on + strandat 58.528 kb on - strandat 58.687 kb on - strandat 58.687 kb on - strandat 58.811 kb on + strandat 58.812 kb on - strandat 58.887 kb on - strand, within AZOBR_RS22500at 59.001 kb on - strand, within AZOBR_RS22500at 59.088 kb on - strand, within AZOBR_RS22500at 59.526 kb on - strand, within AZOBR_RS22500at 59.526 kb on - strand, within AZOBR_RS22500at 59.531 kb on + strand, within AZOBR_RS22500at 59.532 kb on - strand, within AZOBR_RS22500at 59.895 kb on - strand, within AZOBR_RS22500at 60.353 kb on - strandat 60.448 kb on + strand, within AZOBR_RS22505at 60.448 kb on + strand, within AZOBR_RS22505at 60.449 kb on - strand, within AZOBR_RS22505at 60.449 kb on - strand, within AZOBR_RS22505at 60.449 kb on - strand, within AZOBR_RS22505at 60.464 kb on + strand, within AZOBR_RS22505at 60.465 kb on - strand, within AZOBR_RS22505at 60.604 kb on + strand, within AZOBR_RS22505at 60.605 kb on - strand, within AZOBR_RS22505at 60.605 kb on - strand, within AZOBR_RS22505at 60.611 kb on - strand, within AZOBR_RS22505at 60.634 kb on + strand, within AZOBR_RS22505at 60.634 kb on + strand, within AZOBR_RS22505at 60.634 kb on + strand, within AZOBR_RS22505at 60.634 kb on + strand, within AZOBR_RS22505at 60.635 kb on - strand, within AZOBR_RS22505at 60.635 kb on - strand, within AZOBR_RS22505at 60.635 kb on - strand, within AZOBR_RS22505at 60.635 kb on - strand, within AZOBR_RS22505at 60.667 kb on + strand, within AZOBR_RS22505at 60.668 kb on - strand, within AZOBR_RS22505at 61.183 kb on + strand, within AZOBR_RS22505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.3 mM
remove
57,810 - +1.6
57,810 - +0.1
57,848 + AZOBR_RS22495 0.15 -0.0
57,848 + AZOBR_RS22495 0.15 -1.8
57,848 + AZOBR_RS22495 0.15 +0.4
57,848 + AZOBR_RS22495 0.15 -0.8
57,848 + AZOBR_RS22495 0.15 +1.4
57,848 + AZOBR_RS22495 0.15 -0.8
57,848 + AZOBR_RS22495 0.15 +0.6
57,848 + AZOBR_RS22495 0.15 -1.2
57,848 + AZOBR_RS22495 0.15 -0.2
57,849 - AZOBR_RS22495 0.15 +0.7
57,849 - AZOBR_RS22495 0.15 +0.7
57,849 - AZOBR_RS22495 0.15 -0.7
57,849 - AZOBR_RS22495 0.15 +0.4
57,849 - AZOBR_RS22495 0.15 +0.8
57,849 - AZOBR_RS22495 0.15 +0.6
57,961 - AZOBR_RS22495 0.31 +0.2
57,986 + AZOBR_RS22495 0.35 +0.7
57,987 - AZOBR_RS22495 0.35 +0.9
58,151 - AZOBR_RS22495 0.59 +0.0
58,161 - AZOBR_RS22495 0.60 +0.1
58,502 + +0.1
58,502 + -0.6
58,502 + +0.6
58,502 + +0.7
58,502 + +0.4
58,502 + +0.3
58,503 - +0.3
58,503 - +0.4
58,527 + -1.2
58,528 - -1.0
58,687 - +0.4
58,687 - +0.2
58,811 + -0.1
58,812 - +0.4
58,887 - AZOBR_RS22500 0.11 +0.2
59,001 - AZOBR_RS22500 0.18 +0.5
59,088 - AZOBR_RS22500 0.24 -0.4
59,526 - AZOBR_RS22500 0.53 -0.3
59,526 - AZOBR_RS22500 0.53 -0.6
59,531 + AZOBR_RS22500 0.54 -0.8
59,532 - AZOBR_RS22500 0.54 -0.5
59,895 - AZOBR_RS22500 0.78 +0.5
60,353 - -0.4
60,448 + AZOBR_RS22505 0.16 +0.3
60,448 + AZOBR_RS22505 0.16 +0.3
60,449 - AZOBR_RS22505 0.16 +0.1
60,449 - AZOBR_RS22505 0.16 +0.6
60,449 - AZOBR_RS22505 0.16 -0.8
60,464 + AZOBR_RS22505 0.17 -0.0
60,465 - AZOBR_RS22505 0.17 +0.3
60,604 + AZOBR_RS22505 0.28 +0.2
60,605 - AZOBR_RS22505 0.28 +0.5
60,605 - AZOBR_RS22505 0.28 +0.2
60,611 - AZOBR_RS22505 0.28 +1.5
60,634 + AZOBR_RS22505 0.30 -0.8
60,634 + AZOBR_RS22505 0.30 +0.3
60,634 + AZOBR_RS22505 0.30 +0.1
60,634 + AZOBR_RS22505 0.30 -0.0
60,635 - AZOBR_RS22505 0.30 -0.3
60,635 - AZOBR_RS22505 0.30 -0.1
60,635 - AZOBR_RS22505 0.30 -3.0
60,635 - AZOBR_RS22505 0.30 -1.4
60,667 + AZOBR_RS22505 0.33 +1.4
60,668 - AZOBR_RS22505 0.33 +1.8
61,183 + AZOBR_RS22505 0.72 +0.3

Or see this region's nucleotide sequence