Experiment: Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01540 and AZOBR_RS01545 overlap by 4 nucleotides AZOBR_RS01545 and AZOBR_RS01550 are separated by 63 nucleotides AZOBR_RS01550 and AZOBR_RS01555 are separated by 177 nucleotides
AZOBR_RS01540: AZOBR_RS01540 - hypothetical protein, at 317,194 to 317,973
_RS01540
AZOBR_RS01545: AZOBR_RS01545 - permease, at 317,970 to 318,887
_RS01545
AZOBR_RS01550: AZOBR_RS01550 - carbohydrate kinase, at 318,951 to 319,949
_RS01550
AZOBR_RS01555: AZOBR_RS01555 - membrane protein, at 320,127 to 320,819
_RS01555
Position (kb) 318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 318.275 kb on - strand, within AZOBR_RS01545 at 318.376 kb on + strand, within AZOBR_RS01545 at 318.535 kb on + strand, within AZOBR_RS01545 at 318.535 kb on + strand, within AZOBR_RS01545 at 318.535 kb on + strand, within AZOBR_RS01545 at 318.536 kb on - strand, within AZOBR_RS01545 at 318.579 kb on + strand, within AZOBR_RS01545 at 318.579 kb on + strand, within AZOBR_RS01545 at 318.580 kb on - strand, within AZOBR_RS01545 at 318.580 kb on - strand, within AZOBR_RS01545 at 318.878 kb on - strand at 318.878 kb on - strand at 318.924 kb on + strand at 318.924 kb on + strand at 318.925 kb on - strand at 318.925 kb on - strand at 318.925 kb on - strand at 318.925 kb on - strand at 318.925 kb on - strand at 318.926 kb on + strand at 318.927 kb on - strand at 318.931 kb on + strand at 318.931 kb on + strand at 318.932 kb on - strand at 318.932 kb on - strand at 318.952 kb on + strand at 318.975 kb on - strand at 318.975 kb on - strand at 319.108 kb on + strand, within AZOBR_RS01550 at 319.280 kb on - strand, within AZOBR_RS01550 at 319.471 kb on + strand, within AZOBR_RS01550 at 319.471 kb on + strand, within AZOBR_RS01550 at 319.472 kb on - strand, within AZOBR_RS01550 at 319.483 kb on + strand, within AZOBR_RS01550 at 319.484 kb on - strand, within AZOBR_RS01550 at 319.484 kb on - strand, within AZOBR_RS01550 at 319.484 kb on - strand, within AZOBR_RS01550 at 319.714 kb on + strand, within AZOBR_RS01550 at 319.715 kb on - strand, within AZOBR_RS01550 at 319.715 kb on - strand, within AZOBR_RS01550 at 319.804 kb on + strand, within AZOBR_RS01550 at 319.804 kb on + strand, within AZOBR_RS01550 at 320.015 kb on - strand at 320.017 kb on - strand at 320.081 kb on + strand at 320.086 kb on - strand at 320.086 kb on - strand at 320.114 kb on - strand at 320.127 kb on - strand at 320.127 kb on - strand at 320.526 kb on + strand, within AZOBR_RS01555 at 320.526 kb on + strand, within AZOBR_RS01555 at 320.527 kb on - strand, within AZOBR_RS01555 at 320.527 kb on - strand, within AZOBR_RS01555 at 320.766 kb on + strand at 320.766 kb on + strand at 320.766 kb on + strand at 320.766 kb on + strand at 320.766 kb on + strand at 320.766 kb on + strand at 320.766 kb on + strand at 320.767 kb on - strand at 320.767 kb on - strand at 320.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3 mM remove 318,275 - AZOBR_RS01545 0.33 +0.8 318,376 + AZOBR_RS01545 0.44 +3.4 318,535 + AZOBR_RS01545 0.62 +2.1 318,535 + AZOBR_RS01545 0.62 +2.9 318,535 + AZOBR_RS01545 0.62 -2.9 318,536 - AZOBR_RS01545 0.62 -0.4 318,579 + AZOBR_RS01545 0.66 +3.2 318,579 + AZOBR_RS01545 0.66 +3.8 318,580 - AZOBR_RS01545 0.66 +2.6 318,580 - AZOBR_RS01545 0.66 +4.5 318,878 - +2.6 318,878 - +2.4 318,924 + +2.6 318,924 + +1.9 318,925 - +1.6 318,925 - -0.9 318,925 - +2.2 318,925 - -3.3 318,925 - +2.0 318,926 + +2.1 318,927 - +0.2 318,931 + +1.9 318,931 + +0.1 318,932 - +0.1 318,932 - -0.4 318,952 + -0.4 318,975 - +0.9 318,975 - +0.2 319,108 + AZOBR_RS01550 0.16 -0.1 319,280 - AZOBR_RS01550 0.33 +3.5 319,471 + AZOBR_RS01550 0.52 +1.4 319,471 + AZOBR_RS01550 0.52 +0.7 319,472 - AZOBR_RS01550 0.52 +0.9 319,483 + AZOBR_RS01550 0.53 -0.4 319,484 - AZOBR_RS01550 0.53 +0.6 319,484 - AZOBR_RS01550 0.53 -2.5 319,484 - AZOBR_RS01550 0.53 +1.7 319,714 + AZOBR_RS01550 0.76 +0.6 319,715 - AZOBR_RS01550 0.76 +1.4 319,715 - AZOBR_RS01550 0.76 +0.4 319,804 + AZOBR_RS01550 0.85 +0.5 319,804 + AZOBR_RS01550 0.85 +0.9 320,015 - +2.0 320,017 - -3.0 320,081 + -0.1 320,086 - -0.4 320,086 - +3.0 320,114 - -0.5 320,127 - -1.2 320,127 - +0.1 320,526 + AZOBR_RS01555 0.58 +0.2 320,526 + AZOBR_RS01555 0.58 +1.4 320,527 - AZOBR_RS01555 0.58 +0.2 320,527 - AZOBR_RS01555 0.58 +0.2 320,766 + -0.3 320,766 + +0.2 320,766 + +0.2 320,766 + -0.1 320,766 + +0.0 320,766 + +1.8 320,766 + +0.6 320,767 - -2.8 320,767 - -0.5 320,889 - -1.2
Or see this region's nucleotide sequence