Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28860

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28855 and AO356_28860 overlap by 1 nucleotidesAO356_28860 and AO356_28865 overlap by 32 nucleotides AO356_28855: AO356_28855 - structural protein MipA, at 6,711,328 to 6,712,125 _28855 AO356_28860: AO356_28860 - transcriptional regulator, at 6,712,125 to 6,712,811 _28860 AO356_28865: AO356_28865 - histidine kinase, at 6,712,780 to 6,714,174 _28865 Position (kb) 6712 6713Strain fitness (log2 ratio) -1 0 1at 6711.194 kb on + strandat 6711.194 kb on + strandat 6711.195 kb on - strandat 6711.195 kb on - strandat 6711.195 kb on - strandat 6711.196 kb on + strandat 6711.261 kb on - strandat 6711.261 kb on - strandat 6711.264 kb on + strandat 6711.374 kb on + strandat 6711.375 kb on - strandat 6711.485 kb on - strand, within AO356_28855at 6711.485 kb on - strand, within AO356_28855at 6711.485 kb on - strand, within AO356_28855at 6711.485 kb on - strand, within AO356_28855at 6711.486 kb on + strand, within AO356_28855at 6711.526 kb on + strand, within AO356_28855at 6711.649 kb on + strand, within AO356_28855at 6711.650 kb on - strand, within AO356_28855at 6711.650 kb on - strand, within AO356_28855at 6711.898 kb on + strand, within AO356_28855at 6711.899 kb on - strand, within AO356_28855at 6711.943 kb on + strand, within AO356_28855at 6711.944 kb on - strand, within AO356_28855at 6711.991 kb on + strand, within AO356_28855at 6711.991 kb on + strand, within AO356_28855at 6711.991 kb on + strand, within AO356_28855at 6711.991 kb on + strand, within AO356_28855at 6711.991 kb on + strand, within AO356_28855at 6711.992 kb on - strand, within AO356_28855at 6711.992 kb on - strand, within AO356_28855at 6712.073 kb on + strandat 6712.073 kb on + strandat 6712.074 kb on - strandat 6712.109 kb on - strandat 6712.260 kb on + strand, within AO356_28860at 6712.390 kb on + strand, within AO356_28860at 6712.391 kb on - strand, within AO356_28860at 6712.419 kb on + strand, within AO356_28860at 6712.649 kb on - strand, within AO356_28860at 6712.837 kb on + strandat 6712.838 kb on - strandat 6712.838 kb on - strandat 6712.838 kb on - strandat 6712.838 kb on - strandat 6713.029 kb on + strand, within AO356_28865at 6713.029 kb on + strand, within AO356_28865at 6713.185 kb on + strand, within AO356_28865at 6713.185 kb on + strand, within AO356_28865at 6713.185 kb on + strand, within AO356_28865at 6713.185 kb on + strand, within AO356_28865at 6713.186 kb on - strand, within AO356_28865at 6713.353 kb on + strand, within AO356_28865at 6713.353 kb on + strand, within AO356_28865at 6713.353 kb on + strand, within AO356_28865at 6713.354 kb on - strand, within AO356_28865at 6713.354 kb on - strand, within AO356_28865at 6713.370 kb on + strand, within AO356_28865at 6713.457 kb on - strand, within AO356_28865at 6713.711 kb on - strand, within AO356_28865at 6713.713 kb on - strand, within AO356_28865at 6713.713 kb on - strand, within AO356_28865at 6713.761 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.766 kb on - strand, within AO356_28865at 6713.766 kb on - strand, within AO356_28865at 6713.792 kb on + strand, within AO356_28865at 6713.793 kb on - strand, within AO356_28865at 6713.793 kb on - strand, within AO356_28865

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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6,711,194 + -0.7
6,711,194 + -1.3
6,711,195 - -0.5
6,711,195 - +0.3
6,711,195 - -0.4
6,711,196 + +0.6
6,711,261 - +0.4
6,711,261 - -0.2
6,711,264 + -0.2
6,711,374 + -0.8
6,711,375 - +0.7
6,711,485 - AO356_28855 0.20 -1.1
6,711,485 - AO356_28855 0.20 +1.0
6,711,485 - AO356_28855 0.20 +0.2
6,711,485 - AO356_28855 0.20 -1.4
6,711,486 + AO356_28855 0.20 +0.4
6,711,526 + AO356_28855 0.25 -0.2
6,711,649 + AO356_28855 0.40 +1.6
6,711,650 - AO356_28855 0.40 +0.0
6,711,650 - AO356_28855 0.40 -0.2
6,711,898 + AO356_28855 0.71 +0.0
6,711,899 - AO356_28855 0.72 +0.1
6,711,943 + AO356_28855 0.77 +0.2
6,711,944 - AO356_28855 0.77 +0.6
6,711,991 + AO356_28855 0.83 -0.1
6,711,991 + AO356_28855 0.83 -0.8
6,711,991 + AO356_28855 0.83 -0.8
6,711,991 + AO356_28855 0.83 -1.2
6,711,991 + AO356_28855 0.83 -0.5
6,711,992 - AO356_28855 0.83 +0.5
6,711,992 - AO356_28855 0.83 +0.4
6,712,073 + -0.1
6,712,073 + +0.1
6,712,074 - -1.3
6,712,109 - +0.6
6,712,260 + AO356_28860 0.20 -0.7
6,712,390 + AO356_28860 0.39 -0.5
6,712,391 - AO356_28860 0.39 -0.9
6,712,419 + AO356_28860 0.43 -1.2
6,712,649 - AO356_28860 0.76 +0.7
6,712,837 + +0.9
6,712,838 - +0.7
6,712,838 - -0.5
6,712,838 - -0.4
6,712,838 - -0.2
6,713,029 + AO356_28865 0.18 +0.6
6,713,029 + AO356_28865 0.18 -0.1
6,713,185 + AO356_28865 0.29 -0.6
6,713,185 + AO356_28865 0.29 +1.0
6,713,185 + AO356_28865 0.29 +0.6
6,713,185 + AO356_28865 0.29 -0.2
6,713,186 - AO356_28865 0.29 +0.1
6,713,353 + AO356_28865 0.41 +1.6
6,713,353 + AO356_28865 0.41 +0.6
6,713,353 + AO356_28865 0.41 -1.6
6,713,354 - AO356_28865 0.41 +0.4
6,713,354 - AO356_28865 0.41 -0.4
6,713,370 + AO356_28865 0.42 -0.4
6,713,457 - AO356_28865 0.49 +0.5
6,713,711 - AO356_28865 0.67 +0.3
6,713,713 - AO356_28865 0.67 +0.7
6,713,713 - AO356_28865 0.67 -0.3
6,713,761 + AO356_28865 0.70 -0.2
6,713,765 + AO356_28865 0.71 -0.6
6,713,765 + AO356_28865 0.71 -0.6
6,713,765 + AO356_28865 0.71 -0.5
6,713,766 - AO356_28865 0.71 -1.2
6,713,766 - AO356_28865 0.71 +0.1
6,713,792 + AO356_28865 0.73 -0.5
6,713,793 - AO356_28865 0.73 -0.6
6,713,793 - AO356_28865 0.73 +0.4

Or see this region's nucleotide sequence