Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26815 and AO356_26820 are separated by 38 nucleotides AO356_26820 and AO356_26825 are separated by 129 nucleotides AO356_26825 and AO356_26830 overlap by 1 nucleotides
AO356_26815: AO356_26815 - short-chain dehydrogenase, at 6,106,310 to 6,107,368
_26815
AO356_26820: AO356_26820 - hypothetical protein, at 6,107,407 to 6,107,667
_26820
AO356_26825: AO356_26825 - histidine kinase, at 6,107,797 to 6,109,170
_26825
AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874
_26830
Position (kb)
6107
6108
6109
6110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6106.857 kb on + strand, within AO356_26815 at 6107.201 kb on + strand, within AO356_26815 at 6107.477 kb on + strand, within AO356_26820 at 6107.477 kb on + strand, within AO356_26820 at 6107.564 kb on + strand, within AO356_26820 at 6107.780 kb on + strand at 6108.055 kb on + strand, within AO356_26825 at 6108.056 kb on - strand, within AO356_26825 at 6108.056 kb on - strand, within AO356_26825 at 6108.692 kb on - strand, within AO356_26825 at 6108.692 kb on - strand, within AO356_26825 at 6108.747 kb on + strand, within AO356_26825 at 6108.835 kb on - strand, within AO356_26825 at 6108.890 kb on + strand, within AO356_26825 at 6108.894 kb on + strand, within AO356_26825 at 6108.895 kb on - strand, within AO356_26825 at 6108.998 kb on + strand, within AO356_26825 at 6108.999 kb on - strand, within AO356_26825 at 6109.179 kb on - strand at 6109.193 kb on + strand at 6109.193 kb on + strand at 6109.194 kb on - strand at 6109.215 kb on + strand at 6109.215 kb on + strand at 6109.215 kb on + strand at 6109.216 kb on - strand at 6109.216 kb on - strand at 6109.220 kb on - strand at 6109.220 kb on - strand at 6109.585 kb on + strand, within AO356_26830 at 6109.585 kb on + strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.741 kb on + strand, within AO356_26830 at 6109.742 kb on - strand, within AO356_26830 at 6109.759 kb on + strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.832 kb on - strand at 6109.915 kb on + strand at 6110.056 kb on + strand at 6110.086 kb on + strand at 6110.086 kb on + strand at 6110.087 kb on - strand at 6110.134 kb on + strand at 6110.135 kb on - strand at 6110.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 6,106,857 + AO356_26815 0.52 +1.1 6,107,201 + AO356_26815 0.84 -0.1 6,107,477 + AO356_26820 0.27 +0.2 6,107,477 + AO356_26820 0.27 +0.9 6,107,564 + AO356_26820 0.60 -0.1 6,107,780 + +1.2 6,108,055 + AO356_26825 0.19 -1.0 6,108,056 - AO356_26825 0.19 -1.0 6,108,056 - AO356_26825 0.19 -0.4 6,108,692 - AO356_26825 0.65 -0.1 6,108,692 - AO356_26825 0.65 +0.2 6,108,747 + AO356_26825 0.69 -0.4 6,108,835 - AO356_26825 0.76 +0.9 6,108,890 + AO356_26825 0.80 -0.0 6,108,894 + AO356_26825 0.80 -1.6 6,108,895 - AO356_26825 0.80 +0.3 6,108,998 + AO356_26825 0.87 -1.0 6,108,999 - AO356_26825 0.87 -0.2 6,109,179 - +0.1 6,109,193 + +0.8 6,109,193 + +0.2 6,109,194 - +0.9 6,109,215 + -0.5 6,109,215 + -0.2 6,109,215 + -0.7 6,109,216 - +0.0 6,109,216 - +0.7 6,109,220 - +0.1 6,109,220 - +0.1 6,109,585 + AO356_26830 0.59 -0.1 6,109,585 + AO356_26830 0.59 +0.1 6,109,697 - AO356_26830 0.75 -2.5 6,109,697 - AO356_26830 0.75 +0.5 6,109,741 + AO356_26830 0.81 -1.7 6,109,742 - AO356_26830 0.81 -0.9 6,109,759 + AO356_26830 0.84 -0.5 6,109,802 - AO356_26830 0.90 +0.1 6,109,802 - AO356_26830 0.90 -0.5 6,109,802 - AO356_26830 0.90 +0.8 6,109,831 + -0.0 6,109,831 + +0.8 6,109,831 + +0.9 6,109,832 - -1.3 6,109,915 + +0.4 6,110,056 + -0.3 6,110,086 + -0.7 6,110,086 + +2.1 6,110,087 - +0.7 6,110,134 + -0.4 6,110,135 - -0.6 6,110,153 + -0.6
Or see this region's nucleotide sequence