Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24410

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24400 and AO356_24405 are separated by 179 nucleotidesAO356_24405 and AO356_24410 are separated by 123 nucleotidesAO356_24410 and AO356_24415 are separated by 182 nucleotidesAO356_24415 and AO356_24420 are separated by 23 nucleotides AO356_24400: AO356_24400 - universal stress protein UspA, at 5,511,122 to 5,511,985 _24400 AO356_24405: AO356_24405 - tRNA hydroxylase, at 5,512,165 to 5,512,770 _24405 AO356_24410: AO356_24410 - alanine acetyltransferase, at 5,512,894 to 5,513,382 _24410 AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182 _24415 AO356_24420: AO356_24420 - XRE family transcriptional regulator, at 5,514,206 to 5,515,288 _24420 Position (kb) 5512 5513 5514Strain fitness (log2 ratio) -2 -1 0 1at 5512.029 kb on + strandat 5512.029 kb on + strandat 5512.029 kb on + strandat 5512.030 kb on - strandat 5512.030 kb on - strandat 5512.030 kb on - strandat 5512.030 kb on - strandat 5512.031 kb on + strandat 5512.032 kb on - strandat 5512.032 kb on - strandat 5512.050 kb on + strandat 5512.051 kb on - strandat 5512.051 kb on - strandat 5512.057 kb on + strandat 5512.122 kb on - strandat 5512.123 kb on + strandat 5512.123 kb on + strandat 5512.123 kb on + strandat 5512.123 kb on + strandat 5512.124 kb on - strandat 5512.145 kb on + strandat 5512.146 kb on - strandat 5512.315 kb on + strand, within AO356_24405at 5512.316 kb on - strand, within AO356_24405at 5512.316 kb on - strand, within AO356_24405at 5512.316 kb on - strand, within AO356_24405at 5512.316 kb on - strand, within AO356_24405at 5512.634 kb on - strand, within AO356_24405at 5512.649 kb on - strand, within AO356_24405at 5512.654 kb on + strand, within AO356_24405at 5512.785 kb on + strandat 5512.895 kb on + strandat 5512.896 kb on - strandat 5512.896 kb on - strandat 5512.947 kb on - strand, within AO356_24410at 5512.947 kb on - strand, within AO356_24410at 5513.195 kb on + strand, within AO356_24410at 5513.196 kb on - strand, within AO356_24410at 5513.196 kb on - strand, within AO356_24410at 5513.300 kb on + strand, within AO356_24410at 5513.313 kb on - strand, within AO356_24410at 5513.405 kb on + strandat 5513.405 kb on + strandat 5513.405 kb on + strandat 5513.406 kb on - strandat 5513.406 kb on - strandat 5513.566 kb on + strandat 5513.743 kb on + strand, within AO356_24415at 5513.744 kb on - strand, within AO356_24415at 5513.840 kb on - strand, within AO356_24415at 5514.038 kb on - strand, within AO356_24415at 5514.064 kb on + strand, within AO356_24415at 5514.065 kb on - strand, within AO356_24415

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,512,029 + -1.3
5,512,029 + +0.1
5,512,029 + +0.2
5,512,030 - +0.5
5,512,030 - -1.0
5,512,030 - +0.4
5,512,030 - -0.6
5,512,031 + -0.4
5,512,032 - +0.4
5,512,032 - +0.1
5,512,050 + +1.6
5,512,051 - -0.1
5,512,051 - -0.0
5,512,057 + +0.1
5,512,122 - +0.2
5,512,123 + +1.0
5,512,123 + +0.4
5,512,123 + -1.4
5,512,123 + +0.5
5,512,124 - -0.8
5,512,145 + +0.3
5,512,146 - -0.3
5,512,315 + AO356_24405 0.25 +0.1
5,512,316 - AO356_24405 0.25 +1.2
5,512,316 - AO356_24405 0.25 -1.0
5,512,316 - AO356_24405 0.25 +0.7
5,512,316 - AO356_24405 0.25 +1.0
5,512,634 - AO356_24405 0.77 -1.4
5,512,649 - AO356_24405 0.80 +0.0
5,512,654 + AO356_24405 0.81 +0.7
5,512,785 + -1.4
5,512,895 + -0.2
5,512,896 - +0.6
5,512,896 - +0.1
5,512,947 - AO356_24410 0.11 -0.7
5,512,947 - AO356_24410 0.11 -0.4
5,513,195 + AO356_24410 0.62 +0.5
5,513,196 - AO356_24410 0.62 +0.6
5,513,196 - AO356_24410 0.62 +0.1
5,513,300 + AO356_24410 0.83 -2.2
5,513,313 - AO356_24410 0.86 +0.4
5,513,405 + -0.3
5,513,405 + -0.4
5,513,405 + -0.5
5,513,406 - +1.2
5,513,406 - +1.7
5,513,566 + +0.2
5,513,743 + AO356_24415 0.29 +0.7
5,513,744 - AO356_24415 0.29 +0.2
5,513,840 - AO356_24415 0.44 +1.1
5,514,038 - AO356_24415 0.77 +0.7
5,514,064 + AO356_24415 0.81 +0.7
5,514,065 - AO356_24415 0.81 +0.6

Or see this region's nucleotide sequence