Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24280

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24275 and AO356_24280 are separated by 17 nucleotidesAO356_24280 and AO356_24285 are separated by 7 nucleotides AO356_24275: AO356_24275 - taurine catabolism dioxygenase TauD, at 5,474,215 to 5,475,261 _24275 AO356_24280: AO356_24280 - peptide synthase, at 5,475,279 to 5,478,707 _24280 AO356_24285: AO356_24285 - hypothetical protein, at 5,478,715 to 5,479,647 _24285 Position (kb) 5475 5476 5477 5478 5479Strain fitness (log2 ratio) -2 -1 0 1at 5474.423 kb on + strand, within AO356_24275at 5474.423 kb on + strand, within AO356_24275at 5474.831 kb on + strand, within AO356_24275at 5474.865 kb on - strand, within AO356_24275at 5474.921 kb on + strand, within AO356_24275at 5474.921 kb on + strand, within AO356_24275at 5474.921 kb on + strand, within AO356_24275at 5474.921 kb on + strand, within AO356_24275at 5474.921 kb on + strand, within AO356_24275at 5474.922 kb on - strand, within AO356_24275at 5474.925 kb on + strand, within AO356_24275at 5474.925 kb on + strand, within AO356_24275at 5474.925 kb on + strand, within AO356_24275at 5474.966 kb on + strand, within AO356_24275at 5474.966 kb on + strand, within AO356_24275at 5474.967 kb on - strand, within AO356_24275at 5475.255 kb on + strandat 5475.255 kb on + strandat 5475.256 kb on - strandat 5475.261 kb on + strandat 5475.637 kb on + strand, within AO356_24280at 5475.638 kb on - strand, within AO356_24280at 5475.929 kb on - strand, within AO356_24280at 5476.215 kb on + strand, within AO356_24280at 5476.215 kb on + strand, within AO356_24280at 5476.216 kb on - strand, within AO356_24280at 5477.429 kb on - strand, within AO356_24280at 5477.429 kb on - strand, within AO356_24280at 5477.429 kb on - strand, within AO356_24280at 5477.494 kb on + strand, within AO356_24280at 5477.494 kb on + strand, within AO356_24280at 5477.495 kb on - strand, within AO356_24280at 5478.023 kb on - strand, within AO356_24280at 5478.041 kb on - strand, within AO356_24280at 5478.128 kb on - strand, within AO356_24280at 5478.174 kb on + strand, within AO356_24280at 5478.175 kb on - strand, within AO356_24280at 5478.175 kb on - strand, within AO356_24280at 5478.214 kb on + strand, within AO356_24280at 5478.214 kb on + strand, within AO356_24280at 5478.215 kb on - strand, within AO356_24280at 5478.463 kb on + strandat 5478.463 kb on + strandat 5478.490 kb on + strandat 5478.839 kb on + strand, within AO356_24285at 5478.896 kb on + strand, within AO356_24285at 5478.897 kb on - strand, within AO356_24285at 5478.897 kb on - strand, within AO356_24285at 5478.950 kb on - strand, within AO356_24285at 5479.175 kb on + strand, within AO356_24285at 5479.187 kb on + strand, within AO356_24285at 5479.187 kb on + strand, within AO356_24285at 5479.187 kb on + strand, within AO356_24285at 5479.334 kb on + strand, within AO356_24285at 5479.334 kb on + strand, within AO356_24285at 5479.335 kb on - strand, within AO356_24285at 5479.389 kb on + strand, within AO356_24285at 5479.389 kb on + strand, within AO356_24285at 5479.389 kb on + strand, within AO356_24285at 5479.389 kb on + strand, within AO356_24285at 5479.389 kb on + strand, within AO356_24285at 5479.390 kb on - strand, within AO356_24285at 5479.390 kb on - strand, within AO356_24285at 5479.390 kb on - strand, within AO356_24285at 5479.391 kb on + strand, within AO356_24285at 5479.530 kb on + strand, within AO356_24285at 5479.531 kb on - strand, within AO356_24285at 5479.531 kb on - strand, within AO356_24285

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,474,423 + AO356_24275 0.20 -1.9
5,474,423 + AO356_24275 0.20 -1.0
5,474,831 + AO356_24275 0.59 -0.9
5,474,865 - AO356_24275 0.62 -0.4
5,474,921 + AO356_24275 0.67 -0.8
5,474,921 + AO356_24275 0.67 -0.7
5,474,921 + AO356_24275 0.67 -0.7
5,474,921 + AO356_24275 0.67 +0.6
5,474,921 + AO356_24275 0.67 +0.1
5,474,922 - AO356_24275 0.68 -1.0
5,474,925 + AO356_24275 0.68 -0.4
5,474,925 + AO356_24275 0.68 -0.1
5,474,925 + AO356_24275 0.68 +0.6
5,474,966 + AO356_24275 0.72 -0.7
5,474,966 + AO356_24275 0.72 +0.2
5,474,967 - AO356_24275 0.72 -0.8
5,475,255 + -2.1
5,475,255 + -1.3
5,475,256 - +0.1
5,475,261 + -0.2
5,475,637 + AO356_24280 0.10 -1.2
5,475,638 - AO356_24280 0.10 +0.4
5,475,929 - AO356_24280 0.19 -0.4
5,476,215 + AO356_24280 0.27 -1.2
5,476,215 + AO356_24280 0.27 -2.1
5,476,216 - AO356_24280 0.27 -0.3
5,477,429 - AO356_24280 0.63 +1.4
5,477,429 - AO356_24280 0.63 +1.0
5,477,429 - AO356_24280 0.63 +0.6
5,477,494 + AO356_24280 0.65 +0.1
5,477,494 + AO356_24280 0.65 -0.7
5,477,495 - AO356_24280 0.65 +0.7
5,478,023 - AO356_24280 0.80 -1.4
5,478,041 - AO356_24280 0.81 -0.2
5,478,128 - AO356_24280 0.83 +0.1
5,478,174 + AO356_24280 0.84 -0.1
5,478,175 - AO356_24280 0.84 +0.2
5,478,175 - AO356_24280 0.84 -0.0
5,478,214 + AO356_24280 0.86 -0.4
5,478,214 + AO356_24280 0.86 -0.1
5,478,215 - AO356_24280 0.86 +0.1
5,478,463 + +0.3
5,478,463 + +0.6
5,478,490 + -0.1
5,478,839 + AO356_24285 0.13 -0.0
5,478,896 + AO356_24285 0.19 +0.1
5,478,897 - AO356_24285 0.20 -0.7
5,478,897 - AO356_24285 0.20 +0.3
5,478,950 - AO356_24285 0.25 +0.1
5,479,175 + AO356_24285 0.49 +0.6
5,479,187 + AO356_24285 0.51 -0.4
5,479,187 + AO356_24285 0.51 -0.4
5,479,187 + AO356_24285 0.51 -1.1
5,479,334 + AO356_24285 0.66 -0.0
5,479,334 + AO356_24285 0.66 +0.4
5,479,335 - AO356_24285 0.66 +0.4
5,479,389 + AO356_24285 0.72 -1.0
5,479,389 + AO356_24285 0.72 -0.0
5,479,389 + AO356_24285 0.72 -0.8
5,479,389 + AO356_24285 0.72 +0.1
5,479,389 + AO356_24285 0.72 +0.1
5,479,390 - AO356_24285 0.72 -1.1
5,479,390 - AO356_24285 0.72 -0.3
5,479,390 - AO356_24285 0.72 +1.0
5,479,391 + AO356_24285 0.72 +0.2
5,479,530 + AO356_24285 0.87 +0.9
5,479,531 - AO356_24285 0.87 -0.9
5,479,531 - AO356_24285 0.87 +0.0

Or see this region's nucleotide sequence