Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24140

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24135 and AO356_24140 are separated by 155 nucleotidesAO356_24140 and AO356_24145 are separated by 398 nucleotides AO356_24135: AO356_24135 - hypothetical protein, at 5,412,784 to 5,413,722 _24135 AO356_24140: AO356_24140 - hypothetical protein, at 5,413,878 to 5,414,513 _24140 AO356_24145: AO356_24145 - hypothetical protein, at 5,414,912 to 5,415,940 _24145 Position (kb) 5413 5414 5415Strain fitness (log2 ratio) -2 -1 0 1 2at 5412.962 kb on + strand, within AO356_24135at 5412.963 kb on - strand, within AO356_24135at 5412.963 kb on - strand, within AO356_24135at 5413.008 kb on - strand, within AO356_24135at 5413.008 kb on - strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.040 kb on - strand, within AO356_24135at 5413.040 kb on - strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.042 kb on - strand, within AO356_24135at 5413.042 kb on - strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.236 kb on + strand, within AO356_24135at 5413.335 kb on - strand, within AO356_24135at 5413.366 kb on + strand, within AO356_24135at 5413.606 kb on + strand, within AO356_24135at 5413.746 kb on + strandat 5413.775 kb on + strandat 5413.828 kb on + strandat 5413.828 kb on + strandat 5413.828 kb on + strandat 5413.829 kb on - strandat 5413.829 kb on - strandat 5413.831 kb on - strandat 5413.831 kb on - strandat 5413.840 kb on - strandat 5413.864 kb on - strandat 5413.864 kb on - strandat 5413.910 kb on + strandat 5413.918 kb on + strandat 5413.990 kb on + strand, within AO356_24140at 5413.999 kb on + strand, within AO356_24140at 5413.999 kb on + strand, within AO356_24140at 5414.000 kb on - strand, within AO356_24140at 5414.000 kb on - strand, within AO356_24140at 5414.089 kb on + strand, within AO356_24140at 5414.090 kb on - strand, within AO356_24140at 5414.093 kb on - strand, within AO356_24140at 5414.093 kb on - strand, within AO356_24140at 5414.239 kb on + strand, within AO356_24140at 5414.475 kb on + strandat 5414.518 kb on - strandat 5414.564 kb on + strandat 5414.573 kb on + strandat 5414.610 kb on + strandat 5414.610 kb on + strandat 5414.611 kb on - strandat 5414.611 kb on - strandat 5414.860 kb on + strandat 5414.877 kb on + strandat 5414.877 kb on + strandat 5414.878 kb on - strandat 5414.878 kb on - strandat 5414.887 kb on - strandat 5414.888 kb on + strandat 5414.888 kb on + strandat 5414.889 kb on - strandat 5414.889 kb on - strandat 5414.889 kb on - strandat 5414.889 kb on - strandat 5414.892 kb on + strandat 5414.892 kb on + strandat 5414.892 kb on + strandat 5414.893 kb on - strandat 5414.893 kb on - strandat 5414.910 kb on + strandat 5414.910 kb on + strandat 5414.910 kb on + strandat 5414.913 kb on + strandat 5414.913 kb on + strandat 5414.913 kb on + strandat 5414.914 kb on - strandat 5414.977 kb on - strandat 5414.977 kb on - strandat 5415.039 kb on + strand, within AO356_24145at 5415.039 kb on + strand, within AO356_24145at 5415.040 kb on - strand, within AO356_24145at 5415.040 kb on - strand, within AO356_24145at 5415.166 kb on + strand, within AO356_24145at 5415.166 kb on + strand, within AO356_24145at 5415.167 kb on - strand, within AO356_24145at 5415.228 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.237 kb on + strand, within AO356_24145at 5415.238 kb on - strand, within AO356_24145at 5415.238 kb on - strand, within AO356_24145at 5415.253 kb on + strand, within AO356_24145at 5415.253 kb on + strand, within AO356_24145at 5415.254 kb on - strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.262 kb on + strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.263 kb on - strand, within AO356_24145at 5415.286 kb on + strand, within AO356_24145at 5415.297 kb on + strand, within AO356_24145at 5415.297 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.328 kb on + strand, within AO356_24145at 5415.329 kb on - strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.420 kb on + strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.421 kb on - strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.424 kb on + strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.425 kb on - strand, within AO356_24145at 5415.499 kb on + strand, within AO356_24145at 5415.500 kb on - strand, within AO356_24145at 5415.500 kb on - strand, within AO356_24145

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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5,412,962 + AO356_24135 0.19 +1.1
5,412,963 - AO356_24135 0.19 -0.2
5,412,963 - AO356_24135 0.19 +0.7
5,413,008 - AO356_24135 0.24 -0.2
5,413,008 - AO356_24135 0.24 +1.1
5,413,039 + AO356_24135 0.27 +0.6
5,413,039 + AO356_24135 0.27 -0.6
5,413,039 + AO356_24135 0.27 +0.9
5,413,040 - AO356_24135 0.27 -0.0
5,413,040 - AO356_24135 0.27 +0.6
5,413,041 + AO356_24135 0.27 +1.1
5,413,041 + AO356_24135 0.27 +0.3
5,413,041 + AO356_24135 0.27 -0.1
5,413,041 + AO356_24135 0.27 +0.8
5,413,041 + AO356_24135 0.27 +0.9
5,413,041 + AO356_24135 0.27 +0.6
5,413,041 + AO356_24135 0.27 +0.1
5,413,042 - AO356_24135 0.27 +1.2
5,413,042 - AO356_24135 0.27 -0.5
5,413,045 + AO356_24135 0.28 -0.7
5,413,045 + AO356_24135 0.28 +1.0
5,413,045 + AO356_24135 0.28 -2.0
5,413,046 - AO356_24135 0.28 -1.4
5,413,046 - AO356_24135 0.28 -0.9
5,413,046 - AO356_24135 0.28 -0.1
5,413,046 - AO356_24135 0.28 +1.0
5,413,046 - AO356_24135 0.28 +0.1
5,413,236 + AO356_24135 0.48 -0.9
5,413,335 - AO356_24135 0.59 -0.9
5,413,366 + AO356_24135 0.62 +0.7
5,413,606 + AO356_24135 0.88 +0.1
5,413,746 + -0.2
5,413,775 + +0.0
5,413,828 + -0.5
5,413,828 + +1.1
5,413,828 + +0.6
5,413,829 - -0.1
5,413,829 - +0.8
5,413,831 - +0.4
5,413,831 - +0.1
5,413,840 - +0.7
5,413,864 - +1.1
5,413,864 - +0.7
5,413,910 + -1.0
5,413,918 + -1.9
5,413,990 + AO356_24140 0.18 +1.1
5,413,999 + AO356_24140 0.19 +0.6
5,413,999 + AO356_24140 0.19 -0.2
5,414,000 - AO356_24140 0.19 -0.8
5,414,000 - AO356_24140 0.19 -1.2
5,414,089 + AO356_24140 0.33 +0.4
5,414,090 - AO356_24140 0.33 +0.1
5,414,093 - AO356_24140 0.34 +0.3
5,414,093 - AO356_24140 0.34 +0.6
5,414,239 + AO356_24140 0.57 -0.8
5,414,475 + -2.2
5,414,518 - +0.1
5,414,564 + +0.7
5,414,573 + -1.2
5,414,610 + +1.3
5,414,610 + +0.3
5,414,611 - -1.4
5,414,611 - -0.2
5,414,860 + -0.8
5,414,877 + +0.3
5,414,877 + -0.1
5,414,878 - +1.4
5,414,878 - +0.2
5,414,887 - -0.4
5,414,888 + -0.1
5,414,888 + +0.8
5,414,889 - -1.7
5,414,889 - -0.2
5,414,889 - -0.3
5,414,889 - -0.0
5,414,892 + -0.7
5,414,892 + -0.9
5,414,892 + -1.2
5,414,893 - +0.4
5,414,893 - +0.1
5,414,910 + +0.8
5,414,910 + +1.2
5,414,910 + -0.9
5,414,913 + -0.4
5,414,913 + -0.2
5,414,913 + +0.3
5,414,914 - -0.6
5,414,977 - +0.0
5,414,977 - -0.9
5,415,039 + AO356_24145 0.12 -0.2
5,415,039 + AO356_24145 0.12 -0.0
5,415,040 - AO356_24145 0.12 -0.7
5,415,040 - AO356_24145 0.12 +1.3
5,415,166 + AO356_24145 0.25 -0.1
5,415,166 + AO356_24145 0.25 +0.7
5,415,167 - AO356_24145 0.25 +1.0
5,415,228 + AO356_24145 0.31 +0.1
5,415,237 + AO356_24145 0.32 +0.4
5,415,237 + AO356_24145 0.32 -0.2
5,415,237 + AO356_24145 0.32 +0.9
5,415,238 - AO356_24145 0.32 -2.0
5,415,238 - AO356_24145 0.32 +2.1
5,415,253 + AO356_24145 0.33 +0.9
5,415,253 + AO356_24145 0.33 +1.1
5,415,254 - AO356_24145 0.33 -0.9
5,415,262 + AO356_24145 0.34 -1.5
5,415,262 + AO356_24145 0.34 +0.1
5,415,262 + AO356_24145 0.34 +0.7
5,415,263 - AO356_24145 0.34 -1.4
5,415,263 - AO356_24145 0.34 +0.3
5,415,263 - AO356_24145 0.34 +0.6
5,415,263 - AO356_24145 0.34 +0.5
5,415,263 - AO356_24145 0.34 +1.1
5,415,286 + AO356_24145 0.36 -0.7
5,415,297 + AO356_24145 0.37 -0.3
5,415,297 + AO356_24145 0.37 +1.2
5,415,328 + AO356_24145 0.40 -0.5
5,415,328 + AO356_24145 0.40 -0.0
5,415,328 + AO356_24145 0.40 -0.4
5,415,329 - AO356_24145 0.41 +0.1
5,415,420 + AO356_24145 0.49 -0.9
5,415,420 + AO356_24145 0.49 +1.4
5,415,420 + AO356_24145 0.49 +1.1
5,415,420 + AO356_24145 0.49 +1.0
5,415,420 + AO356_24145 0.49 +0.8
5,415,420 + AO356_24145 0.49 +0.1
5,415,420 + AO356_24145 0.49 +0.0
5,415,420 + AO356_24145 0.49 +0.5
5,415,420 + AO356_24145 0.49 -1.5
5,415,421 - AO356_24145 0.49 -0.4
5,415,421 - AO356_24145 0.49 +1.0
5,415,421 - AO356_24145 0.49 -0.9
5,415,421 - AO356_24145 0.49 +0.4
5,415,421 - AO356_24145 0.49 -1.9
5,415,421 - AO356_24145 0.49 +0.0
5,415,421 - AO356_24145 0.49 +0.7
5,415,421 - AO356_24145 0.49 +0.7
5,415,421 - AO356_24145 0.49 +0.4
5,415,421 - AO356_24145 0.49 -0.3
5,415,421 - AO356_24145 0.49 +1.4
5,415,424 + AO356_24145 0.50 +0.8
5,415,424 + AO356_24145 0.50 +0.7
5,415,424 + AO356_24145 0.50 -0.1
5,415,424 + AO356_24145 0.50 -1.7
5,415,424 + AO356_24145 0.50 -0.5
5,415,424 + AO356_24145 0.50 +0.3
5,415,424 + AO356_24145 0.50 -0.3
5,415,425 - AO356_24145 0.50 +0.5
5,415,425 - AO356_24145 0.50 +0.7
5,415,425 - AO356_24145 0.50 -1.5
5,415,499 + AO356_24145 0.57 +0.9
5,415,500 - AO356_24145 0.57 +1.4
5,415,500 - AO356_24145 0.57 +0.0

Or see this region's nucleotide sequence