Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21790 and AO356_21795 overlap by 4 nucleotides AO356_21795 and AO356_21800 overlap by 4 nucleotides AO356_21800 and AO356_21805 are separated by 214 nucleotides AO356_21805 and AO356_21810 overlap by 1 nucleotides
AO356_21790: AO356_21790 - sulfonate ABC transporter ATP-binding protein, at 4,877,548 to 4,878,396
_21790
AO356_21795: AO356_21795 - PBS lyase, at 4,878,393 to 4,879,355
_21795
AO356_21800: AO356_21800 - hypothetical protein, at 4,879,352 to 4,879,639
_21800
AO356_21805: AO356_21805 - LexA family transcriptional regulator, at 4,879,854 to 4,880,471
_21805
AO356_21810: AO356_21810 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,880,471 to 4,881,103
_21810
Position (kb) 4879
4880 Strain fitness (log2 ratio) -1
0
1
2
3 at 4878.404 kb on - strand at 4878.935 kb on + strand, within AO356_21795 at 4879.120 kb on - strand, within AO356_21795 at 4879.327 kb on + strand at 4879.328 kb on - strand at 4879.725 kb on + strand at 4879.725 kb on + strand at 4879.726 kb on - strand at 4879.729 kb on + strand at 4879.729 kb on + strand at 4879.730 kb on - strand at 4879.730 kb on - strand at 4879.730 kb on - strand at 4879.736 kb on + strand at 4879.736 kb on + strand at 4879.736 kb on + strand at 4879.736 kb on + strand at 4879.737 kb on - strand at 4879.982 kb on + strand, within AO356_21805 at 4879.982 kb on + strand, within AO356_21805 at 4879.983 kb on - strand, within AO356_21805 at 4879.983 kb on - strand, within AO356_21805 at 4880.205 kb on + strand, within AO356_21805 at 4880.205 kb on + strand, within AO356_21805 at 4880.434 kb on + strand at 4880.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 4,878,404 - +0.2 4,878,935 + AO356_21795 0.56 +0.2 4,879,120 - AO356_21795 0.75 +1.3 4,879,327 + +0.2 4,879,328 - -0.0 4,879,725 + +0.2 4,879,725 + +1.0 4,879,726 - +1.2 4,879,729 + +0.6 4,879,729 + +0.3 4,879,730 - -0.1 4,879,730 - -1.4 4,879,730 - -0.7 4,879,736 + +0.2 4,879,736 + +0.1 4,879,736 + -1.5 4,879,736 + -0.9 4,879,737 - +1.5 4,879,982 + AO356_21805 0.21 -0.2 4,879,982 + AO356_21805 0.21 +1.9 4,879,983 - AO356_21805 0.21 -0.3 4,879,983 - AO356_21805 0.21 -0.1 4,880,205 + AO356_21805 0.57 -1.2 4,880,205 + AO356_21805 0.57 +2.9 4,880,434 + -1.7 4,880,435 - +0.0
Or see this region's nucleotide sequence