Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21700 and AO356_21705 are separated by 242 nucleotides AO356_21705 and AO356_21710 are separated by 102 nucleotides AO356_21710 and AO356_21715 overlap by 4 nucleotides
AO356_21700: AO356_21700 - DNA topoisomerase III, at 4,855,345 to 4,857,291
_21700
AO356_21705: AO356_21705 - response regulator, at 4,857,534 to 4,857,941
_21705
AO356_21710: AO356_21710 - RNA polymerase subunit sigma, at 4,858,044 to 4,858,565
_21710
AO356_21715: AO356_21715 - iron dicitrate transport regulator FecR, at 4,858,562 to 4,859,521
_21715
Position (kb) 4857
4858 Strain fitness (log2 ratio) -1
0
1 at 4856.649 kb on - strand, within AO356_21700 at 4856.834 kb on + strand, within AO356_21700 at 4856.834 kb on + strand, within AO356_21700 at 4856.915 kb on - strand, within AO356_21700 at 4857.044 kb on + strand, within AO356_21700 at 4857.044 kb on + strand, within AO356_21700 at 4857.045 kb on - strand, within AO356_21700 at 4857.045 kb on - strand, within AO356_21700 at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.291 kb on + strand at 4857.291 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.367 kb on - strand at 4857.374 kb on + strand at 4857.475 kb on + strand at 4857.476 kb on - strand at 4857.476 kb on - strand at 4857.509 kb on + strand at 4857.510 kb on - strand at 4857.569 kb on + strand at 4857.569 kb on + strand at 4857.605 kb on + strand, within AO356_21705 at 4857.606 kb on - strand, within AO356_21705 at 4857.606 kb on - strand, within AO356_21705 at 4857.734 kb on + strand, within AO356_21705 at 4857.943 kb on + strand at 4857.944 kb on - strand at 4858.089 kb on + strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.172 kb on + strand, within AO356_21710 at 4858.173 kb on - strand, within AO356_21710 at 4858.230 kb on + strand, within AO356_21710 at 4858.296 kb on + strand, within AO356_21710 at 4858.456 kb on - strand, within AO356_21710 at 4858.456 kb on - strand, within AO356_21710 at 4858.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 4,856,649 - AO356_21700 0.67 -0.8 4,856,834 + AO356_21700 0.76 +0.0 4,856,834 + AO356_21700 0.76 -0.3 4,856,915 - AO356_21700 0.81 -0.9 4,857,044 + AO356_21700 0.87 +1.1 4,857,044 + AO356_21700 0.87 +0.7 4,857,045 - AO356_21700 0.87 -0.3 4,857,045 - AO356_21700 0.87 -0.1 4,857,281 + -0.4 4,857,281 + -0.6 4,857,281 + -0.6 4,857,281 + +0.6 4,857,282 - -0.3 4,857,282 - +0.9 4,857,282 - -0.9 4,857,282 - -0.3 4,857,291 + -0.7 4,857,291 + -0.1 4,857,326 + -0.8 4,857,326 + +0.8 4,857,326 + +0.1 4,857,326 + -0.5 4,857,326 + -0.9 4,857,326 + -0.1 4,857,326 + +0.4 4,857,326 + +0.3 4,857,326 + -0.0 4,857,327 - +0.0 4,857,327 - -0.4 4,857,327 - +0.3 4,857,327 - +0.3 4,857,327 - +0.3 4,857,327 - +1.1 4,857,327 - +0.4 4,857,327 - +0.1 4,857,367 - -1.6 4,857,374 + -0.5 4,857,475 + -0.2 4,857,476 - -1.3 4,857,476 - +0.2 4,857,509 + -0.0 4,857,510 - -1.0 4,857,569 + +0.3 4,857,569 + -0.2 4,857,605 + AO356_21705 0.17 -0.5 4,857,606 - AO356_21705 0.18 -0.9 4,857,606 - AO356_21705 0.18 -0.4 4,857,734 + AO356_21705 0.49 -0.6 4,857,943 + +0.3 4,857,944 - +0.9 4,858,089 + -0.7 4,858,090 - -0.4 4,858,090 - +0.9 4,858,090 - +1.1 4,858,090 - -1.3 4,858,172 + AO356_21710 0.25 +0.7 4,858,173 - AO356_21710 0.25 -0.7 4,858,230 + AO356_21710 0.36 +1.1 4,858,296 + AO356_21710 0.48 -1.0 4,858,456 - AO356_21710 0.79 -0.7 4,858,456 - AO356_21710 0.79 +0.3 4,858,614 - +0.3
Or see this region's nucleotide sequence