Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18315

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18305 and AO356_18310 are separated by 222 nucleotidesAO356_18310 and AO356_18315 overlap by 4 nucleotidesAO356_18315 and AO356_18320 are separated by 192 nucleotides AO356_18305: AO356_18305 - alkyl hydroperoxide reductase, at 4,124,529 to 4,125,131 _18305 AO356_18310: AO356_18310 - ribonuclease T, at 4,125,354 to 4,126,031 _18310 AO356_18315: AO356_18315 - dihydroorotase, at 4,126,028 to 4,127,074 _18315 AO356_18320: AO356_18320 - hypothetical protein, at 4,127,267 to 4,128,256 _18320 Position (kb) 4126 4127 4128Strain fitness (log2 ratio) -1 0 1 2at 4125.102 kb on + strandat 4125.103 kb on - strandat 4125.129 kb on + strandat 4125.129 kb on + strandat 4125.129 kb on + strandat 4125.130 kb on - strandat 4125.130 kb on - strandat 4125.233 kb on - strandat 4125.233 kb on - strandat 4125.233 kb on - strandat 4125.233 kb on - strandat 4125.233 kb on - strandat 4125.355 kb on + strandat 4125.356 kb on - strandat 4125.356 kb on - strandat 4125.356 kb on - strandat 4125.356 kb on - strandat 4127.076 kb on - strandat 4127.161 kb on + strandat 4127.161 kb on + strandat 4127.162 kb on - strandat 4127.162 kb on - strandat 4127.174 kb on + strandat 4127.174 kb on + strandat 4127.175 kb on - strandat 4127.175 kb on - strandat 4127.175 kb on - strandat 4127.244 kb on + strandat 4127.244 kb on + strandat 4127.245 kb on - strandat 4127.245 kb on - strandat 4127.245 kb on - strandat 4127.245 kb on - strandat 4127.246 kb on + strandat 4127.246 kb on + strandat 4127.247 kb on - strandat 4127.247 kb on - strandat 4127.247 kb on - strandat 4127.279 kb on + strandat 4127.283 kb on + strandat 4127.283 kb on + strandat 4127.283 kb on + strandat 4127.284 kb on - strandat 4127.284 kb on - strandat 4127.284 kb on - strandat 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.471 kb on + strand, within AO356_18320at 4127.472 kb on - strand, within AO356_18320at 4127.472 kb on - strand, within AO356_18320at 4127.472 kb on - strand, within AO356_18320at 4127.472 kb on - strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.583 kb on + strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.584 kb on - strand, within AO356_18320at 4127.662 kb on + strand, within AO356_18320at 4127.663 kb on - strand, within AO356_18320at 4127.717 kb on - strand, within AO356_18320at 4127.733 kb on - strand, within AO356_18320at 4128.013 kb on + strand, within AO356_18320

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,125,102 + +0.2
4,125,103 - +0.2
4,125,129 + -0.1
4,125,129 + -0.5
4,125,129 + -1.0
4,125,130 - +0.3
4,125,130 - -1.1
4,125,233 - -0.2
4,125,233 - -0.5
4,125,233 - +0.3
4,125,233 - -0.3
4,125,233 - +0.1
4,125,355 + -0.4
4,125,356 - +1.4
4,125,356 - -0.3
4,125,356 - +1.5
4,125,356 - -0.6
4,127,076 - -0.3
4,127,161 + -0.2
4,127,161 + +2.0
4,127,162 - +0.9
4,127,162 - -1.0
4,127,174 + +0.9
4,127,174 + -1.5
4,127,175 - -0.8
4,127,175 - -0.3
4,127,175 - +0.4
4,127,244 + -0.2
4,127,244 + +0.5
4,127,245 - +0.9
4,127,245 - +0.7
4,127,245 - -0.3
4,127,245 - -0.6
4,127,246 + +1.0
4,127,246 + -0.4
4,127,247 - +0.8
4,127,247 - -0.3
4,127,247 - -0.5
4,127,279 + +0.2
4,127,283 + +0.4
4,127,283 + -0.8
4,127,283 + +1.0
4,127,284 - +0.3
4,127,284 - -1.1
4,127,284 - +1.4
4,127,471 + AO356_18320 0.21 -0.4
4,127,471 + AO356_18320 0.21 -0.3
4,127,471 + AO356_18320 0.21 +1.2
4,127,471 + AO356_18320 0.21 +1.0
4,127,471 + AO356_18320 0.21 +0.4
4,127,471 + AO356_18320 0.21 -0.2
4,127,471 + AO356_18320 0.21 +0.1
4,127,471 + AO356_18320 0.21 +0.6
4,127,471 + AO356_18320 0.21 -0.3
4,127,472 - AO356_18320 0.21 -1.2
4,127,472 - AO356_18320 0.21 +0.1
4,127,472 - AO356_18320 0.21 +0.1
4,127,472 - AO356_18320 0.21 +0.3
4,127,583 + AO356_18320 0.32 +0.0
4,127,583 + AO356_18320 0.32 +0.1
4,127,583 + AO356_18320 0.32 +0.5
4,127,583 + AO356_18320 0.32 -0.5
4,127,583 + AO356_18320 0.32 -1.0
4,127,583 + AO356_18320 0.32 -0.8
4,127,583 + AO356_18320 0.32 -0.1
4,127,583 + AO356_18320 0.32 -0.2
4,127,584 - AO356_18320 0.32 +0.2
4,127,584 - AO356_18320 0.32 -0.4
4,127,584 - AO356_18320 0.32 +0.7
4,127,584 - AO356_18320 0.32 +1.0
4,127,584 - AO356_18320 0.32 -0.5
4,127,584 - AO356_18320 0.32 +0.6
4,127,584 - AO356_18320 0.32 +0.3
4,127,584 - AO356_18320 0.32 -0.0
4,127,662 + AO356_18320 0.40 +0.9
4,127,663 - AO356_18320 0.40 +0.2
4,127,717 - AO356_18320 0.45 +0.6
4,127,733 - AO356_18320 0.47 -0.2
4,128,013 + AO356_18320 0.75 +0.1

Or see this region's nucleotide sequence