Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09735 and AO356_09740 overlap by 4 nucleotides AO356_09740 and AO356_09745 are separated by 577 nucleotides AO356_09745 and AO356_09750 are separated by 76 nucleotides AO356_09750 and AO356_09755 are separated by 203 nucleotides
AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780
_09735
AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079
_09740
AO356_09745: AO356_09745 - hypothetical protein, at 2,211,657 to 2,212,019
_09745
AO356_09750: AO356_09750 - rRNA methylase, at 2,212,096 to 2,212,551
_09750
AO356_09755: AO356_09755 - preprotein translocase subunit SecB, at 2,212,755 to 2,213,237
_09755
Position (kb)
2211
2212
2213 Strain fitness (log2 ratio)
-1
0
1
2 at 2211.140 kb on + strand at 2211.140 kb on + strand at 2211.266 kb on + strand at 2211.267 kb on - strand at 2211.399 kb on + strand at 2211.451 kb on + strand at 2211.452 kb on - strand at 2211.452 kb on - strand at 2211.452 kb on - strand at 2211.456 kb on - strand at 2211.456 kb on - strand at 2211.485 kb on + strand at 2211.485 kb on + strand at 2211.486 kb on - strand at 2211.512 kb on + strand at 2211.512 kb on + strand at 2211.512 kb on + strand at 2211.513 kb on - strand at 2211.552 kb on + strand at 2211.553 kb on - strand at 2211.579 kb on + strand at 2211.579 kb on + strand at 2211.579 kb on + strand at 2211.600 kb on - strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.658 kb on + strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2211.659 kb on - strand at 2212.032 kb on + strand at 2212.032 kb on + strand at 2212.032 kb on + strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.033 kb on - strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.061 kb on + strand at 2212.062 kb on - strand at 2212.062 kb on - strand at 2212.079 kb on + strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.080 kb on - strand at 2212.247 kb on - strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.255 kb on + strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.256 kb on - strand, within AO356_09750 at 2212.329 kb on + strand, within AO356_09750 at 2212.329 kb on + strand, within AO356_09750 at 2212.330 kb on - strand, within AO356_09750 at 2212.425 kb on - strand, within AO356_09750 at 2212.501 kb on - strand, within AO356_09750 at 2212.501 kb on - strand, within AO356_09750 at 2212.519 kb on + strand at 2212.520 kb on - strand at 2212.520 kb on - strand at 2212.737 kb on - strand at 2212.737 kb on - strand at 2212.749 kb on - strand at 2212.749 kb on - strand at 2212.749 kb on - strand at 2212.757 kb on - strand at 2212.807 kb on + strand, within AO356_09755 at 2212.808 kb on - strand, within AO356_09755
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 2,211,140 + +0.0 2,211,140 + +0.8 2,211,266 + +0.0 2,211,267 - +0.9 2,211,399 + +1.0 2,211,451 + +1.1 2,211,452 - +0.2 2,211,452 - -0.5 2,211,452 - +0.3 2,211,456 - +0.5 2,211,456 - +1.7 2,211,485 + +1.0 2,211,485 + -0.0 2,211,486 - +1.1 2,211,512 + +0.4 2,211,512 + +0.3 2,211,512 + +0.4 2,211,513 - +1.8 2,211,552 + -0.8 2,211,553 - -0.7 2,211,579 + +0.5 2,211,579 + +0.0 2,211,579 + +1.2 2,211,600 - +1.0 2,211,658 + +0.8 2,211,658 + +0.4 2,211,658 + +0.8 2,211,658 + +0.6 2,211,658 + +2.1 2,211,658 + -0.4 2,211,659 - -0.3 2,211,659 - +1.6 2,211,659 - +0.6 2,211,659 - +0.0 2,211,659 - -0.0 2,211,659 - +2.0 2,211,659 - +0.6 2,212,032 + +0.1 2,212,032 + -0.9 2,212,032 + +1.0 2,212,033 - -1.3 2,212,033 - +0.7 2,212,033 - -0.2 2,212,033 - -0.7 2,212,033 - +0.9 2,212,033 - +0.6 2,212,033 - -0.1 2,212,061 + -0.8 2,212,061 + +0.2 2,212,061 + -0.0 2,212,061 + -1.4 2,212,062 - +0.0 2,212,062 - -0.1 2,212,079 + +1.7 2,212,080 - -0.9 2,212,080 - +0.5 2,212,080 - +0.7 2,212,080 - +0.7 2,212,080 - +1.2 2,212,247 - AO356_09750 0.33 -0.5 2,212,255 + AO356_09750 0.35 -0.3 2,212,255 + AO356_09750 0.35 -0.1 2,212,255 + AO356_09750 0.35 -0.8 2,212,255 + AO356_09750 0.35 +1.6 2,212,255 + AO356_09750 0.35 +0.6 2,212,256 - AO356_09750 0.35 +1.5 2,212,256 - AO356_09750 0.35 -0.3 2,212,256 - AO356_09750 0.35 -0.1 2,212,329 + AO356_09750 0.51 -0.5 2,212,329 + AO356_09750 0.51 +0.0 2,212,330 - AO356_09750 0.51 -1.7 2,212,425 - AO356_09750 0.72 -1.7 2,212,501 - AO356_09750 0.89 +0.3 2,212,501 - AO356_09750 0.89 +0.1 2,212,519 + +1.2 2,212,520 - +0.1 2,212,520 - +0.6 2,212,737 - +0.3 2,212,737 - -0.4 2,212,749 - +0.5 2,212,749 - +0.6 2,212,749 - -0.4 2,212,757 - -1.0 2,212,807 + AO356_09755 0.11 -0.1 2,212,808 - AO356_09755 0.11 -0.6
Or see this region's nucleotide sequence