Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04265 and AO356_04270 overlap by 7 nucleotides AO356_04270 and AO356_04275 are separated by 192 nucleotides AO356_04275 and AO356_04280 are separated by 329 nucleotides
AO356_04265: AO356_04265 - anti-sigma factor, at 968,529 to 968,765
_04265
AO356_04270: AO356_04270 - RNA polymerase subunit sigma-24, at 968,759 to 969,370
_04270
AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684
_04275
AO356_04280: AO356_04280 - ATP-dependent RNA helicase HrpA, at 971,014 to 974,925
_04280
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1
2 at 968.863 kb on + strand, within AO356_04270 at 968.863 kb on + strand, within AO356_04270 at 968.909 kb on + strand, within AO356_04270 at 969.117 kb on + strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.261 kb on + strand, within AO356_04270 at 969.262 kb on - strand, within AO356_04270 at 969.310 kb on - strand at 969.521 kb on + strand at 969.521 kb on + strand at 969.522 kb on - strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.655 kb on - strand at 969.655 kb on - strand at 969.700 kb on - strand, within AO356_04275 at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.651 kb on - strand at 970.651 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.717 kb on + strand at 970.718 kb on - strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.785 kb on + strand at 970.786 kb on - strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.837 kb on - strand at 970.838 kb on + strand at 970.839 kb on - strand at 970.839 kb on - strand at 970.857 kb on - strand at 971.106 kb on - strand at 971.126 kb on + strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.336 kb on + strand at 971.586 kb on + strand, within AO356_04280 at 971.587 kb on - strand, within AO356_04280 at 971.624 kb on + strand, within AO356_04280
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 968,863 + AO356_04270 0.17 +0.3 968,863 + AO356_04270 0.17 -0.5 968,909 + AO356_04270 0.25 +0.4 969,117 + AO356_04270 0.58 +0.7 969,118 - AO356_04270 0.59 +0.2 969,118 - AO356_04270 0.59 +0.1 969,261 + AO356_04270 0.82 +0.1 969,262 - AO356_04270 0.82 +0.6 969,310 - +0.4 969,521 + -0.6 969,521 + +0.0 969,522 - +0.3 969,654 + +0.4 969,654 + -1.1 969,654 + +1.1 969,655 - -0.9 969,655 - +0.1 969,700 - AO356_04275 0.12 +0.8 970,596 + +0.4 970,596 + +0.1 970,596 + +1.5 970,596 + +1.7 970,596 + +1.1 970,596 + +0.8 970,596 + +0.2 970,596 + +0.7 970,596 + +0.0 970,596 + -0.4 970,597 - -1.5 970,597 - +0.9 970,597 - +1.1 970,597 - +2.3 970,597 - +0.9 970,597 - -0.3 970,597 - +0.8 970,597 - +1.2 970,597 - -0.5 970,597 - +0.4 970,600 + +0.6 970,600 + +0.0 970,600 + -0.2 970,601 - +0.1 970,601 - -0.1 970,601 - -0.7 970,601 - +1.1 970,650 + +1.1 970,650 + +0.5 970,650 + +0.6 970,651 - -0.4 970,651 - -0.5 970,679 - -0.1 970,679 - +0.7 970,679 - -0.8 970,717 + -1.6 970,718 - -0.1 970,731 + -0.1 970,731 + +0.0 970,731 + -0.7 970,731 + +0.3 970,732 - -0.0 970,732 - +0.0 970,732 - -0.5 970,738 - +0.1 970,738 - +0.4 970,738 - +0.2 970,785 + -0.6 970,786 - +0.2 970,836 + -0.7 970,836 + +1.3 970,836 + +0.5 970,837 - -0.5 970,838 + +0.2 970,839 - -0.3 970,839 - -0.8 970,857 - +0.2 971,106 - +0.3 971,126 + -0.1 971,127 - -0.1 971,127 - +0.9 971,127 - -0.4 971,127 - +0.1 971,336 + +0.8 971,586 + AO356_04280 0.15 +0.3 971,587 - AO356_04280 0.15 +0.4 971,624 + AO356_04280 0.16 -0.4
Or see this region's nucleotide sequence