Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4753

Experiment: BHIS with Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4752 and BT4753 are separated by 428 nucleotidesBT4753 and BT4754 overlap by 1 nucleotides BT4752: BT4752 - conserved hypothetical protein (NCBI ptt file), at 6,236,032 to 6,237,327 BT4752 BT4753: BT4753 - hypothetical protein (NCBI ptt file), at 6,237,756 to 6,237,974 BT4753 BT4754: BT4754 - putative cytosine-specific methyltransferase (NCBI ptt file), at 6,237,974 to 6,239,182 BT4754 Position (kb) 6237 6238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6236.805 kb on + strand, within BT4752at 6237.062 kb on - strand, within BT4752at 6237.277 kb on + strandat 6237.347 kb on + strandat 6237.464 kb on + strandat 6237.465 kb on - strandat 6237.608 kb on - strandat 6237.611 kb on - strandat 6237.751 kb on + strandat 6237.761 kb on + strandat 6237.774 kb on + strandat 6237.874 kb on + strand, within BT4753at 6237.895 kb on + strand, within BT4753at 6237.961 kb on + strandat 6237.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 10 vol%
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6,236,805 + BT4752 0.60 -0.3
6,237,062 - BT4752 0.79 +1.3
6,237,277 + -0.0
6,237,347 + -2.3
6,237,464 + -1.2
6,237,465 - -1.5
6,237,608 - +2.9
6,237,611 - -1.0
6,237,751 + -1.8
6,237,761 + -2.5
6,237,774 + -2.8
6,237,874 + BT4753 0.54 -1.7
6,237,895 + BT4753 0.63 -3.5
6,237,961 + +0.3
6,237,990 - +0.3

Or see this region's nucleotide sequence