Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4605

Experiment: BHIS with Dimethyl Sulfoxide 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 10 vol%
6,028,686	-				-1.8
6,028,719	-				+1.0
6,028,719	-				+0.2
6,028,733	+				-1.3
6,028,782	-		BT4604	0.13	+0.3
6,028,784	-		BT4604	0.14	+2.3
6,029,002	-		BT4604	0.35	-1.2
6,029,006	-		BT4604	0.35	-2.3
6,029,039	+		BT4604	0.38	+0.4
6,029,108	-		BT4604	0.45	+1.3
6,029,175	-		BT4604	0.52	+0.7
6,029,228	+		BT4604	0.57	-1.5
6,029,297	+		BT4604	0.63	+0.3
6,029,298	-		BT4604	0.64	+0.2
6,029,351	+		BT4604	0.69	-0.1
6,029,352	-		BT4604	0.69	-2.2
6,029,352	-		BT4604	0.69	+1.3
6,029,356	-		BT4604	0.69	-1.8
6,029,370	-		BT4604	0.71	-3.5
6,029,370	-		BT4604	0.71	-1.3
6,029,371	+		BT4604	0.71	-0.2
6,029,375	-		BT4604	0.71	-0.8
6,029,394	-		BT4604	0.73	-2.8
6,029,410	-		BT4604	0.74	+0.5
6,029,424	-		BT4604	0.76	-2.3
6,029,521	-		BT4604	0.85	+0.1
6,029,526	-		BT4604	0.86	+0.4
6,029,546	-		BT4604	0.88	-1.5
6,029,572	+				-0.7
6,029,575	-				-0.1
6,029,575	-				+0.2
6,029,579	-				-3.8
6,029,681	-				-0.7
6,029,684	-				-2.4
6,029,684	-				+0.6
6,029,734	-				-2.0
6,029,985	+		BT4605	0.12	-0.3
6,029,985	+		BT4605	0.12	-1.0
6,029,989	+		BT4605	0.12	+0.7
6,029,990	-		BT4605	0.12	-1.2
6,029,990	-		BT4605	0.12	-0.7
6,030,005	-		BT4605	0.13	-2.5
6,030,008	-		BT4605	0.13	-1.3
6,030,146	-		BT4605	0.19	-1.8
6,030,177	-		BT4605	0.20	-1.3
6,030,224	-		BT4605	0.22	-2.4
6,030,235	+		BT4605	0.22	+0.7
6,030,354	-		BT4605	0.27	-3.8
6,030,453	-		BT4605	0.31	-2.1
6,030,460	-		BT4605	0.32	+0.7
6,030,464	-		BT4605	0.32	-1.6
6,030,470	-		BT4605	0.32	-1.8
6,030,537	+		BT4605	0.35	-1.5
6,030,538	-		BT4605	0.35	-1.8
6,030,538	-		BT4605	0.35	+0.0
6,030,554	+		BT4605	0.35	+1.3
6,030,576	+		BT4605	0.36	-2.3
6,030,644	-		BT4605	0.39	-3.2
6,030,646	-		BT4605	0.39	+1.3
6,030,707	-		BT4605	0.42	-1.4
6,030,713	-		BT4605	0.42	-0.8
6,030,713	-		BT4605	0.42	+1.3
6,030,722	+		BT4605	0.42	+1.9
6,030,764	-		BT4605	0.44	-0.1
6,030,950	-		BT4605	0.51	+0.3
6,030,994	+		BT4605	0.53	-2.3
6,030,995	-		BT4605	0.53	-2.4
6,031,004	+		BT4605	0.54	-0.3
6,031,005	-		BT4605	0.54	-1.3
6,031,042	-		BT4605	0.55	-1.0
6,031,084	-		BT4605	0.57	+1.3
6,031,170	+		BT4605	0.60	-0.7
6,031,204	+		BT4605	0.62	-1.3
6,031,247	+		BT4605	0.64	-0.1
6,031,406	-		BT4605	0.70	+0.3
6,031,417	+		BT4605	0.70	+1.3
6,031,479	-		BT4605	0.73	-3.1
6,031,479	-		BT4605	0.73	-3.0
6,031,564	+		BT4605	0.76	-0.6
6,031,591	-		BT4605	0.78	-0.3
6,031,678	-		BT4605	0.81	-1.3
6,031,701	-		BT4605	0.82	-2.7
6,031,705	-		BT4605	0.82	+0.2
6,031,741	-		BT4605	0.84	+0.3
6,031,883	+		BT4605	0.89	+1.6
6,031,884	-		BT4605	0.89	+1.3
6,031,884	-		BT4605	0.89	-2.7
6,031,886	-		BT4605	0.90	+0.4
6,031,886	-		BT4605	0.90	-3.3
6,031,886	-		BT4605	0.90	-4.2
6,031,905	-				+1.3
6,031,996	-				-0.9
6,032,059	-				+0.2
6,032,059	-				-2.5
6,032,091	-				+1.3
6,032,146	-				+0.2
6,032,159	-				-0.9
6,032,178	-				+0.3
6,032,183	-				-1.8
6,032,262	-				+2.0
6,032,282	-				-3.7
6,032,339	+				+1.3
6,032,394	-		BT4606	0.13	-0.3
6,032,400	-		BT4606	0.13	-0.6
6,032,419	+		BT4606	0.15	-1.0
6,032,478	+		BT4606	0.20	-0.3
6,032,480	+		BT4606	0.20	-0.2
6,032,481	-		BT4606	0.20	-0.3
6,032,481	-		BT4606	0.20	-2.7
6,032,508	-		BT4606	0.22	-1.1
6,032,508	-		BT4606	0.22	-2.8
6,032,571	+		BT4606	0.28	-0.3
6,032,574	+		BT4606	0.28	+0.8
6,032,577	-		BT4606	0.28	-0.3
6,032,596	+		BT4606	0.30	-1.2
6,032,603	+		BT4606	0.30	+1.5
6,032,607	-		BT4606	0.31	+0.6
6,032,672	+		BT4606	0.36	+0.3
6,032,716	+		BT4606	0.40	-1.0
6,032,735	+		BT4606	0.41	-4.7
6,032,898	-		BT4606	0.55	+1.6
6,033,000	-		BT4606	0.64	-3.5
6,033,033	-		BT4606	0.67	+0.3
6,033,045	-		BT4606	0.68	-3.0
6,033,061	-		BT4606	0.69	+0.7
6,033,067	+		BT4606	0.69	-0.8
6,033,121	+		BT4606	0.74	-1.8
6,033,141	-		BT4606	0.76	+1.6
6,033,141	-		BT4606	0.76	-2.1