Experiment: BHIS with Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4096 and BT4097 are separated by 84 nucleotides BT4097 and BT4098 are separated by 154 nucleotides
BT4096: BT4096 - conserved hypothetical protein (NCBI ptt file), at 5,351,618 to 5,353,000
BT4096
BT4097: BT4097 - Trk system K+ uptake protein trkH (NCBI ptt file), at 5,353,085 to 5,354,536
BT4097
BT4098: BT4098 - Trk system K+ uptake protein trkA (NCBI ptt file), at 5,354,691 to 5,356,031
BT4098
Position (kb)
5353
5354
5355 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5352.094 kb on + strand, within BT4096 at 5352.095 kb on - strand, within BT4096 at 5352.121 kb on + strand, within BT4096 at 5352.124 kb on + strand, within BT4096 at 5352.133 kb on + strand, within BT4096 at 5352.140 kb on + strand, within BT4096 at 5352.202 kb on - strand, within BT4096 at 5352.205 kb on + strand, within BT4096 at 5352.205 kb on + strand, within BT4096 at 5352.287 kb on - strand, within BT4096 at 5352.422 kb on - strand, within BT4096 at 5352.428 kb on - strand, within BT4096 at 5352.440 kb on + strand, within BT4096 at 5352.476 kb on - strand, within BT4096 at 5352.535 kb on + strand, within BT4096 at 5352.589 kb on + strand, within BT4096 at 5352.651 kb on + strand, within BT4096 at 5352.658 kb on - strand, within BT4096 at 5352.683 kb on + strand, within BT4096 at 5352.697 kb on - strand, within BT4096 at 5352.701 kb on - strand, within BT4096 at 5352.792 kb on + strand, within BT4096 at 5352.895 kb on + strand at 5352.928 kb on - strand at 5353.013 kb on + strand at 5353.034 kb on + strand at 5353.034 kb on + strand at 5353.073 kb on - strand at 5353.078 kb on - strand at 5353.250 kb on - strand, within BT4097 at 5353.532 kb on - strand, within BT4097 at 5353.567 kb on + strand, within BT4097 at 5353.827 kb on - strand, within BT4097 at 5353.948 kb on + strand, within BT4097 at 5354.266 kb on + strand, within BT4097 at 5354.515 kb on - strand at 5354.556 kb on - strand at 5354.588 kb on - strand at 5354.623 kb on - strand at 5354.645 kb on - strand at 5354.658 kb on - strand at 5354.661 kb on - strand at 5354.668 kb on - strand at 5354.668 kb on - strand at 5354.672 kb on - strand at 5354.682 kb on - strand at 5354.693 kb on - strand at 5355.222 kb on + strand, within BT4098 at 5355.257 kb on + strand, within BT4098 at 5355.392 kb on + strand, within BT4098 at 5355.423 kb on - strand, within BT4098
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 10 vol% remove 5,352,094 + BT4096 0.34 -0.2 5,352,095 - BT4096 0.34 -1.0 5,352,121 + BT4096 0.36 +1.4 5,352,124 + BT4096 0.37 +0.1 5,352,133 + BT4096 0.37 -0.6 5,352,140 + BT4096 0.38 +0.3 5,352,202 - BT4096 0.42 +1.0 5,352,205 + BT4096 0.42 -2.5 5,352,205 + BT4096 0.42 -3.3 5,352,287 - BT4096 0.48 +0.4 5,352,422 - BT4096 0.58 +2.2 5,352,428 - BT4096 0.59 -0.9 5,352,440 + BT4096 0.59 -1.5 5,352,476 - BT4096 0.62 +0.1 5,352,535 + BT4096 0.66 -2.9 5,352,589 + BT4096 0.70 +0.2 5,352,651 + BT4096 0.75 -1.6 5,352,658 - BT4096 0.75 +0.3 5,352,683 + BT4096 0.77 -1.1 5,352,697 - BT4096 0.78 +0.4 5,352,701 - BT4096 0.78 -3.8 5,352,792 + BT4096 0.85 -2.8 5,352,895 + -2.8 5,352,928 - +0.7 5,353,013 + +0.6 5,353,034 + +0.4 5,353,034 + -1.6 5,353,073 - +0.4 5,353,078 - +0.2 5,353,250 - BT4097 0.11 -0.9 5,353,532 - BT4097 0.31 -0.2 5,353,567 + BT4097 0.33 -0.9 5,353,827 - BT4097 0.51 -2.8 5,353,948 + BT4097 0.59 -3.1 5,354,266 + BT4097 0.81 -1.2 5,354,515 - -1.9 5,354,556 - -0.8 5,354,588 - +1.4 5,354,623 - -1.7 5,354,645 - -2.3 5,354,658 - +0.7 5,354,661 - +0.3 5,354,668 - -1.6 5,354,668 - -1.6 5,354,672 - -1.1 5,354,682 - -3.4 5,354,693 - -1.2 5,355,222 + BT4098 0.40 -2.6 5,355,257 + BT4098 0.42 -2.3 5,355,392 + BT4098 0.52 -1.2 5,355,423 - BT4098 0.55 -1.4
Or see this region's nucleotide sequence