Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3730

Experiment: BHIS with Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3728 and BT3729 are separated by 71 nucleotidesBT3729 and BT3730 overlap by 4 nucleotidesBT3730 and BT3731 are separated by 77 nucleotidesBT3731 and BT3732 are separated by 97 nucleotides BT3728: BT3728 - riboflavin biosynthesis protein ribD (NCBI ptt file), at 4,838,863 to 4,839,882 BT3728 BT3729: BT3729 - putative protoporphyrinogen oxidase (NCBI ptt file), at 4,839,954 to 4,840,790 BT3729 BT3730: BT3730 - putative regulatory protein (NCBI ptt file), at 4,840,787 to 4,841,269 BT3730 BT3731: BT3731 - orotate phosphoribosyltransferase (NCBI ptt file), at 4,841,347 to 4,841,985 BT3731 BT3732: BT3732 - hypothetical protein (NCBI ptt file), at 4,842,083 to 4,842,493 BT3732 Position (kb) 4840 4841 4842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4839.919 kb on - strandat 4839.922 kb on - strandat 4840.075 kb on - strand, within BT3729at 4840.295 kb on - strand, within BT3729at 4840.295 kb on - strand, within BT3729at 4840.298 kb on + strand, within BT3729at 4840.300 kb on + strand, within BT3729at 4840.300 kb on + strand, within BT3729at 4840.301 kb on - strand, within BT3729at 4840.373 kb on + strand, within BT3729at 4840.395 kb on - strand, within BT3729at 4840.485 kb on + strand, within BT3729at 4840.493 kb on - strand, within BT3729at 4840.687 kb on - strand, within BT3729at 4840.702 kb on + strand, within BT3729at 4840.896 kb on + strand, within BT3730at 4840.987 kb on + strand, within BT3730at 4841.023 kb on - strand, within BT3730at 4841.991 kb on + strandat 4842.036 kb on + strandat 4842.048 kb on + strandat 4842.068 kb on + strandat 4842.082 kb on + strandat 4842.120 kb on - strandat 4842.120 kb on - strandat 4842.138 kb on - strand, within BT3732

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 10 vol%
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4,839,919 - -0.8
4,839,922 - +0.0
4,840,075 - BT3729 0.14 +0.5
4,840,295 - BT3729 0.41 +1.4
4,840,295 - BT3729 0.41 +0.6
4,840,298 + BT3729 0.41 +1.5
4,840,300 + BT3729 0.41 +0.2
4,840,300 + BT3729 0.41 +0.3
4,840,301 - BT3729 0.41 -3.6
4,840,373 + BT3729 0.50 +0.1
4,840,395 - BT3729 0.53 -1.9
4,840,485 + BT3729 0.63 -3.3
4,840,493 - BT3729 0.64 -4.0
4,840,687 - BT3729 0.88 -2.0
4,840,702 + BT3729 0.89 -0.8
4,840,896 + BT3730 0.23 -1.8
4,840,987 + BT3730 0.41 +0.4
4,841,023 - BT3730 0.49 -3.6
4,841,991 + -1.2
4,842,036 + +0.4
4,842,048 + -1.2
4,842,068 + -0.6
4,842,082 + -2.5
4,842,120 - -0.0
4,842,120 - -0.6
4,842,138 - BT3732 0.13 -3.4

Or see this region's nucleotide sequence