Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3291

Experiment: BHIS with Dimethyl Sulfoxide 10 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 10 vol%
4,209,642	+		BT3290	0.25	-3.7
4,209,656	+		BT3290	0.27	-0.8
4,209,656	+		BT3290	0.27	+0.3
4,209,704	+		BT3290	0.32	+0.5
4,209,894	+		BT3290	0.54	+1.5
4,209,895	-		BT3290	0.54	+5.3
4,209,895	-		BT3290	0.54	-1.5
4,209,952	-		BT3290	0.61	+0.9
4,210,005	+		BT3290	0.67	+0.5
4,210,025	+		BT3290	0.69	+0.3
4,210,026	-				+0.5
4,210,026	-		BT3290	0.70	-0.9
4,210,026	-		BT3290	0.70	-0.5
4,210,026	-		BT3290	0.70	-0.2
4,210,065	+		BT3290	0.74	-0.6
4,210,066	-		BT3290	0.74	+1.5
4,210,172	-		BT3290	0.86	-2.6
4,210,180	-		BT3290	0.87	+0.2
4,210,298	-				+2.7
4,210,298	-				-3.2
4,210,298	-				-0.5
4,210,300	-				+1.2
4,210,328	-				-1.5
4,210,332	-				-2.1
4,210,354	-				+0.5
4,210,439	+				+1.2
4,210,469	+				+0.1
4,210,529	-				+2.2
4,210,529	-				-0.5
4,210,568	+				-2.2
4,210,569	-				-0.5
4,210,573	-				-2.3
4,210,587	-				+0.1
4,210,595	+				-0.4
4,210,598	+				+0.5
4,210,627	+				-3.5
4,210,628	-				+0.5
4,210,628	-				-2.8
4,210,752	-				-1.3
4,210,752	-				-1.8
4,210,770	+				-2.3
4,210,848	+		BT3291	0.13	-2.8
4,210,851	+		BT3291	0.13	-3.4
4,210,883	-		BT3291	0.14	-0.5
4,210,902	+		BT3291	0.15	+0.9
4,211,105	+		BT3291	0.24	-1.2
4,211,256	+		BT3291	0.31	-1.5
4,211,256	+		BT3291	0.31	-2.6
4,211,257	-		BT3291	0.31	-1.8
4,211,257	-		BT3291	0.31	-1.1
4,211,417	-		BT3291	0.39	+0.3
4,211,417	-		BT3291	0.39	+0.4
4,211,420	+		BT3291	0.39	-2.7
4,211,421	-		BT3291	0.39	+1.5
4,211,440	+		BT3291	0.40	-0.5
4,211,440	+		BT3291	0.40	-1.3
4,211,441	-		BT3291	0.40	+0.5
4,211,536	-		BT3291	0.44	+0.1
4,211,539	-		BT3291	0.44	+0.1
4,211,544	-		BT3291	0.44	+0.2
4,211,552	-		BT3291	0.45	+0.9
4,211,555	-		BT3291	0.45	+0.4
4,211,609	-		BT3291	0.47	-3.4
4,211,658	+		BT3291	0.49	-3.9
4,211,659	-		BT3291	0.49	-2.4
4,211,692	+		BT3291	0.51	-0.3
4,211,712	+		BT3291	0.52	-2.0
4,211,721	+		BT3291	0.52	-2.4
4,211,860	+		BT3291	0.59	-2.1
4,211,907	-		BT3291	0.61	-0.1
4,211,952	-		BT3291	0.63	-0.7
4,211,995	+		BT3291	0.65	-0.8
4,212,003	+		BT3291	0.65	+0.8
4,212,004	-		BT3291	0.65	-2.8
4,212,064	-		BT3291	0.68	-1.8
4,212,120	+		BT3291	0.70	+0.5
4,212,121	-		BT3291	0.70	-1.0
4,212,121	-		BT3291	0.70	-3.2
4,212,121	-		BT3291	0.70	+1.4
4,212,121	-		BT3291	0.70	-1.7
4,212,209	-		BT3291	0.74	-2.0
4,212,223	-		BT3291	0.75	+0.7
4,212,225	-		BT3291	0.75	+0.3
4,212,292	-		BT3291	0.78	-4.2
4,212,297	+		BT3291	0.78	-1.8
4,212,302	-		BT3291	0.79	-2.0
4,212,318	+		BT3291	0.79	-0.6
4,212,370	+		BT3291	0.82	-0.1
4,212,371	-		BT3291	0.82	-1.3
4,212,371	-		BT3291	0.82	-2.0
4,212,416	+		BT3291	0.84	-0.8
4,212,463	-		BT3291	0.86	+1.5
4,212,510	-		BT3291	0.88	-3.0
4,212,594	-				-2.0
4,212,714	+				+0.5
4,212,715	-				-0.4
4,212,715	-				-1.6
4,212,732	+				+2.2
4,212,733	-				-2.3
4,212,733	-				-3.3
4,212,793	-				-2.1
4,212,850	-				+0.1
4,212,855	-				-1.1
4,212,909	-				+0.7
4,212,950	-				+0.3
4,212,960	-				-0.8
4,212,996	-				-0.4
4,212,998	-				-0.5
4,213,132	-		BT3292	0.15	-2.6
4,213,235	-		BT3292	0.21	-0.2
4,213,235	-		BT3292	0.21	-3.2
4,213,235	-		BT3292	0.21	-2.3
4,213,235	-		BT3292	0.21	-2.1
4,213,239	-		BT3292	0.21	+0.7
4,213,253	+		BT3292	0.22	+1.2
4,213,254	-		BT3292	0.22	-0.3
4,213,254	-		BT3292	0.22	-1.1
4,213,283	+		BT3292	0.23	-0.5
4,213,319	-		BT3292	0.25	-0.4
4,213,389	-		BT3292	0.29	+2.1
4,213,389	-		BT3292	0.29	-2.5
4,213,409	+		BT3292	0.30	-1.0
4,213,410	-		BT3292	0.30	+2.7
4,213,502	+		BT3292	0.36	-0.6
4,213,503	-		BT3292	0.36	+1.5
4,213,523	+		BT3292	0.37	-1.1
4,213,524	-		BT3292	0.37	+0.1
4,213,535	+		BT3292	0.37	-1.3
4,213,535	+		BT3292	0.37	+0.3
4,213,535	+		BT3292	0.37	-2.9
4,213,615	-		BT3292	0.42	-2.9
4,213,670	-		BT3292	0.45	-2.3
4,213,703	-		BT3292	0.47	-0.7
4,213,738	-		BT3292	0.49	+0.3
4,213,738	-		BT3292	0.49	+1.2
4,213,755	-		BT3292	0.50	+1.2
4,213,758	+		BT3292	0.50	+0.5
4,213,759	-		BT3292	0.50	-0.7
4,213,759	-		BT3292	0.50	-0.8