Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0921

Experiment: BHIS with Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0920 and BT0921 are separated by 200 nucleotidesBT0921 and BT0922 are separated by 48 nucleotidesBT0922 and BT0923 are separated by 23 nucleotides BT0920: BT0920 - putative O-sialoglycoprotein endopeptidase (NCBI ptt file), at 1,130,452 to 1,131,471 BT0920 BT0921: BT0921 - conserved hypothetical protein (NCBI ptt file), at 1,131,672 to 1,136,126 BT0921 BT0922: BT0922 - hypothetical protein (NCBI ptt file), at 1,136,175 to 1,137,056 BT0922 BT0923: BT0923 - putative periplasmic protein (NCBI ptt file), at 1,137,080 to 1,137,517 BT0923 Position (kb) 1131 1132 1133 1134 1135 1136 1137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1131.485 kb on - strandat 1131.503 kb on - strandat 1131.593 kb on - strandat 1132.404 kb on - strand, within BT0921at 1132.422 kb on - strand, within BT0921at 1132.581 kb on + strand, within BT0921at 1132.669 kb on + strand, within BT0921at 1133.079 kb on - strand, within BT0921at 1133.407 kb on - strand, within BT0921at 1133.449 kb on - strand, within BT0921at 1133.520 kb on - strand, within BT0921at 1133.570 kb on - strand, within BT0921at 1133.570 kb on - strand, within BT0921at 1133.601 kb on - strand, within BT0921at 1134.271 kb on - strand, within BT0921at 1134.363 kb on + strand, within BT0921at 1134.728 kb on + strand, within BT0921at 1134.734 kb on + strand, within BT0921at 1134.790 kb on - strand, within BT0921at 1134.883 kb on - strand, within BT0921at 1135.145 kb on - strand, within BT0921at 1135.212 kb on + strand, within BT0921at 1135.213 kb on - strand, within BT0921at 1135.214 kb on + strand, within BT0921at 1135.215 kb on - strand, within BT0921at 1135.310 kb on + strand, within BT0921at 1135.389 kb on - strand, within BT0921at 1135.504 kb on - strand, within BT0921at 1136.090 kb on + strandat 1136.144 kb on - strandat 1136.145 kb on + strandat 1136.150 kb on + strandat 1136.177 kb on - strandat 1136.207 kb on + strandat 1136.229 kb on - strandat 1136.255 kb on - strandat 1136.255 kb on - strandat 1136.884 kb on + strand, within BT0922at 1136.885 kb on - strand, within BT0922at 1136.885 kb on - strand, within BT0922at 1136.885 kb on - strand, within BT0922at 1136.929 kb on + strand, within BT0922at 1137.033 kb on + strandat 1137.034 kb on - strandat 1137.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 10 vol%
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1,131,485 - +0.5
1,131,503 - +2.4
1,131,593 - +3.5
1,132,404 - BT0921 0.16 +1.1
1,132,422 - BT0921 0.17 -0.7
1,132,581 + BT0921 0.20 +0.6
1,132,669 + BT0921 0.22 +3.1
1,133,079 - BT0921 0.32 -1.3
1,133,407 - BT0921 0.39 +1.5
1,133,449 - BT0921 0.40 +1.1
1,133,520 - BT0921 0.41 +0.4
1,133,570 - BT0921 0.43 -0.5
1,133,570 - BT0921 0.43 -2.8
1,133,601 - BT0921 0.43 +0.3
1,134,271 - BT0921 0.58 +1.9
1,134,363 + BT0921 0.60 +2.6
1,134,728 + BT0921 0.69 +2.3
1,134,734 + BT0921 0.69 +1.9
1,134,790 - BT0921 0.70 -0.3
1,134,883 - BT0921 0.72 -1.1
1,135,145 - BT0921 0.78 +1.8
1,135,212 + BT0921 0.79 -1.2
1,135,213 - BT0921 0.79 +2.3
1,135,214 + BT0921 0.80 +0.9
1,135,215 - BT0921 0.80 +2.1
1,135,310 + BT0921 0.82 -2.1
1,135,389 - BT0921 0.83 -1.6
1,135,504 - BT0921 0.86 -2.5
1,136,090 + +0.9
1,136,144 - -2.1
1,136,145 + -0.3
1,136,150 + -1.2
1,136,177 - -1.3
1,136,207 + +0.7
1,136,229 - -1.0
1,136,255 - +1.1
1,136,255 - +0.7
1,136,884 + BT0922 0.80 +0.9
1,136,885 - BT0922 0.80 -0.3
1,136,885 - BT0922 0.80 +0.9
1,136,885 - BT0922 0.80 -0.6
1,136,929 + BT0922 0.85 -1.1
1,137,033 + +0.5
1,137,034 - -2.0
1,137,086 - +0.7

Or see this region's nucleotide sequence