Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3935

Experiment: nitrite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3933 and Ga0059261_3934 overlap by 4 nucleotidesGa0059261_3934 and Ga0059261_3935 overlap by 4 nucleotidesGa0059261_3935 and Ga0059261_3936 overlap by 4 nucleotidesGa0059261_3936 and Ga0059261_3937 are separated by 124 nucleotides Ga0059261_3933: Ga0059261_3933 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 4,048,550 to 4,049,797 _3933 Ga0059261_3934: Ga0059261_3934 - MoxR-like ATPases, at 4,049,794 to 4,050,750 _3934 Ga0059261_3935: Ga0059261_3935 - hypothetical protein, at 4,050,747 to 4,051,943 _3935 Ga0059261_3936: Ga0059261_3936 - hypothetical protein, at 4,051,940 to 4,052,611 _3936 Ga0059261_3937: Ga0059261_3937 - Imidazolonepropionase and related amidohydrolases, at 4,052,736 to 4,054,160 _3937 Position (kb) 4050 4051 4052Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4049.879 kb on - strandat 4049.879 kb on - strandat 4049.917 kb on + strand, within Ga0059261_3934at 4049.917 kb on + strand, within Ga0059261_3934at 4049.917 kb on + strand, within Ga0059261_3934at 4049.917 kb on + strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.918 kb on - strand, within Ga0059261_3934at 4049.936 kb on + strand, within Ga0059261_3934at 4049.936 kb on + strand, within Ga0059261_3934at 4049.937 kb on - strand, within Ga0059261_3934at 4049.937 kb on - strand, within Ga0059261_3934at 4049.937 kb on - strand, within Ga0059261_3934at 4050.059 kb on + strand, within Ga0059261_3934at 4050.059 kb on + strand, within Ga0059261_3934at 4050.059 kb on + strand, within Ga0059261_3934at 4050.060 kb on - strand, within Ga0059261_3934at 4050.060 kb on - strand, within Ga0059261_3934at 4050.060 kb on - strand, within Ga0059261_3934at 4050.060 kb on - strand, within Ga0059261_3934at 4050.185 kb on + strand, within Ga0059261_3934at 4050.185 kb on + strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.186 kb on - strand, within Ga0059261_3934at 4050.279 kb on - strand, within Ga0059261_3934at 4050.361 kb on + strand, within Ga0059261_3934at 4050.848 kb on - strandat 4050.848 kb on - strandat 4050.955 kb on + strand, within Ga0059261_3935at 4050.955 kb on + strand, within Ga0059261_3935at 4050.955 kb on + strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4050.956 kb on - strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.007 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.318 kb on + strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.319 kb on - strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.322 kb on + strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strandat 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strand, within Ga0059261_3935at 4051.323 kb on - strandat 4051.323 kb on - strand, within Ga0059261_3935at 4051.381 kb on + strand, within Ga0059261_3935at 4051.382 kb on - strand, within Ga0059261_3935at 4051.667 kb on + strand, within Ga0059261_3935at 4051.668 kb on - strand, within Ga0059261_3935at 4051.832 kb on + strandat 4052.180 kb on + strand, within Ga0059261_3936at 4052.180 kb on + strand, within Ga0059261_3936at 4052.181 kb on - strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.391 kb on + strand, within Ga0059261_3936at 4052.391 kb on + strandat 4052.391 kb on + strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.676 kb on - strandat 4052.676 kb on - strandat 4052.730 kb on + strandat 4052.730 kb on + strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.880 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strandat 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 2.5 mM
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4,049,879 - -1.5
4,049,879 - -0.6
4,049,917 + Ga0059261_3934 0.13 +0.2
4,049,917 + Ga0059261_3934 0.13 -0.4
4,049,917 + Ga0059261_3934 0.13 -1.0
4,049,917 + Ga0059261_3934 0.13 +0.0
4,049,918 - Ga0059261_3934 0.13 +0.8
4,049,918 - Ga0059261_3934 0.13 +0.2
4,049,918 - Ga0059261_3934 0.13 -0.3
4,049,918 - Ga0059261_3934 0.13 -0.7
4,049,918 - Ga0059261_3934 0.13 -0.0
4,049,918 - Ga0059261_3934 0.13 -0.3
4,049,918 - Ga0059261_3934 0.13 -1.6
4,049,936 + Ga0059261_3934 0.15 +0.4
4,049,936 + Ga0059261_3934 0.15 -1.3
4,049,937 - Ga0059261_3934 0.15 -0.4
4,049,937 - Ga0059261_3934 0.15 -1.4
4,049,937 - Ga0059261_3934 0.15 -0.8
4,050,059 + Ga0059261_3934 0.28 -1.3
4,050,059 + Ga0059261_3934 0.28 +0.0
4,050,059 + Ga0059261_3934 0.28 -0.2
4,050,060 - Ga0059261_3934 0.28 +0.2
4,050,060 - Ga0059261_3934 0.28 -0.4
4,050,060 - Ga0059261_3934 0.28 -1.2
4,050,060 - Ga0059261_3934 0.28 +0.1
4,050,185 + Ga0059261_3934 0.41 -0.3
4,050,185 + Ga0059261_3934 0.41 +1.7
4,050,186 - Ga0059261_3934 0.41 -0.0
4,050,186 - Ga0059261_3934 0.41 -0.0
4,050,186 - Ga0059261_3934 0.41 +0.1
4,050,186 - Ga0059261_3934 0.41 -0.5
4,050,186 - Ga0059261_3934 0.41 -0.2
4,050,186 - Ga0059261_3934 0.41 -0.2
4,050,279 - Ga0059261_3934 0.51 -0.4
4,050,361 + Ga0059261_3934 0.59 -0.6
4,050,848 - -0.4
4,050,848 - -0.3
4,050,955 + Ga0059261_3935 0.17 +0.0
4,050,955 + Ga0059261_3935 0.17 -0.1
4,050,955 + Ga0059261_3935 0.17 +1.4
4,050,956 - Ga0059261_3935 0.17 +2.4
4,050,956 - Ga0059261_3935 0.17 -0.3
4,050,956 - Ga0059261_3935 0.17 -0.5
4,051,007 + Ga0059261_3935 0.22 -0.6
4,051,007 + Ga0059261_3935 0.22 -1.2
4,051,007 + Ga0059261_3935 0.22 +0.0
4,051,318 + Ga0059261_3935 0.48 +0.3
4,051,318 + Ga0059261_3935 0.48 -0.1
4,051,318 + Ga0059261_3935 0.48 -2.8
4,051,318 + Ga0059261_3935 0.48 -0.8
4,051,318 + Ga0059261_3935 0.48 +0.6
4,051,318 + Ga0059261_3935 0.48 -1.2
4,051,318 + Ga0059261_3935 0.48 +2.0
4,051,318 + Ga0059261_3935 0.48 -0.1
4,051,318 + Ga0059261_3935 0.48 +0.8
4,051,318 + Ga0059261_3935 0.48 -0.8
4,051,318 + Ga0059261_3935 0.48 +0.1
4,051,318 + Ga0059261_3935 0.48 +0.1
4,051,318 + Ga0059261_3935 0.48 -1.2
4,051,319 - Ga0059261_3935 0.48 +0.4
4,051,319 - Ga0059261_3935 0.48 -0.8
4,051,319 - Ga0059261_3935 0.48 -0.1
4,051,319 - Ga0059261_3935 0.48 +0.9
4,051,319 - Ga0059261_3935 0.48 +0.7
4,051,319 - Ga0059261_3935 0.48 -0.1
4,051,319 - Ga0059261_3935 0.48 -0.3
4,051,319 - Ga0059261_3935 0.48 +0.3
4,051,319 - Ga0059261_3935 0.48 -0.4
4,051,319 - Ga0059261_3935 0.48 -1.8
4,051,319 - Ga0059261_3935 0.48 -0.7
4,051,319 - Ga0059261_3935 0.48 +0.4
4,051,322 + Ga0059261_3935 0.48 -1.6
4,051,322 + Ga0059261_3935 0.48 +0.4
4,051,322 + Ga0059261_3935 0.48 +0.0
4,051,322 + Ga0059261_3935 0.48 -0.2
4,051,322 + Ga0059261_3935 0.48 -0.9
4,051,322 + Ga0059261_3935 0.48 -0.8
4,051,322 + Ga0059261_3935 0.48 -0.8
4,051,322 + Ga0059261_3935 0.48 +0.5
4,051,322 + Ga0059261_3935 0.48 -0.8
4,051,323 - Ga0059261_3935 0.48 +0.6
4,051,323 - Ga0059261_3935 0.48 +1.0
4,051,323 - -0.2
4,051,323 - Ga0059261_3935 0.48 -0.3
4,051,323 - Ga0059261_3935 0.48 -0.5
4,051,323 - -0.2
4,051,323 - Ga0059261_3935 0.48 -0.6
4,051,381 + Ga0059261_3935 0.53 -1.2
4,051,382 - Ga0059261_3935 0.53 -1.4
4,051,667 + Ga0059261_3935 0.77 -0.4
4,051,668 - Ga0059261_3935 0.77 +0.0
4,051,832 + -0.1
4,052,180 + Ga0059261_3936 0.36 +1.1
4,052,180 + Ga0059261_3936 0.36 +0.1
4,052,181 - Ga0059261_3936 0.36 -1.5
4,052,387 + Ga0059261_3936 0.67 -0.2
4,052,387 + Ga0059261_3936 0.67 +0.1
4,052,387 + Ga0059261_3936 0.67 -0.2
4,052,387 + Ga0059261_3936 0.67 -0.7
4,052,387 + Ga0059261_3936 0.67 -1.3
4,052,387 + Ga0059261_3936 0.67 -1.2
4,052,388 - Ga0059261_3936 0.67 -1.7
4,052,388 - Ga0059261_3936 0.67 -0.3
4,052,388 - Ga0059261_3936 0.67 +0.0
4,052,388 - Ga0059261_3936 0.67 -0.1
4,052,388 - Ga0059261_3936 0.67 -0.1
4,052,388 - Ga0059261_3936 0.67 -0.4
4,052,388 - Ga0059261_3936 0.67 +0.1
4,052,388 - Ga0059261_3936 0.67 +0.4
4,052,388 - Ga0059261_3936 0.67 +0.9
4,052,391 + Ga0059261_3936 0.67 -0.6
4,052,391 + +0.1
4,052,391 + Ga0059261_3936 0.67 +0.4
4,052,392 - Ga0059261_3936 0.67 -0.1
4,052,392 - Ga0059261_3936 0.67 -1.1
4,052,392 - Ga0059261_3936 0.67 -1.3
4,052,392 - Ga0059261_3936 0.67 -0.1
4,052,676 - -1.0
4,052,676 - -0.4
4,052,730 + -1.3
4,052,730 + +0.1
4,052,731 - -1.2
4,052,731 - +0.8
4,052,731 - -0.9
4,052,880 + Ga0059261_3937 0.10 -0.2
4,052,892 + +0.8
4,052,892 + Ga0059261_3937 0.11 +0.5
4,052,892 + Ga0059261_3937 0.11 -0.6
4,052,892 + Ga0059261_3937 0.11 +1.4
4,052,893 - Ga0059261_3937 0.11 -1.6
4,052,893 - Ga0059261_3937 0.11 -0.9
4,052,893 - Ga0059261_3937 0.11 -0.6
4,052,893 - Ga0059261_3937 0.11 +0.1
4,052,893 - Ga0059261_3937 0.11 -2.2

Or see this region's nucleotide sequence