Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1941

Experiment: nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 2.5 mM
2,049,024	+		Ga0059261_1940	0.23	-0.1
2,049,024	+		Ga0059261_1940	0.23	+0.1
2,049,025	-		Ga0059261_1940	0.23	+0.8
2,049,029	+		Ga0059261_1940	0.24	+0.3
2,049,029	+		Ga0059261_1940	0.24	-0.0
2,049,029	+		Ga0059261_1940	0.24	-0.3
2,049,029	+		Ga0059261_1940	0.24	+0.9
2,049,029	+		Ga0059261_1940	0.24	+0.0
2,049,029	+		Ga0059261_1940	0.24	-0.1
2,049,029	+		Ga0059261_1940	0.24	-0.6
2,049,030	-		Ga0059261_1940	0.24	-0.6
2,049,030	-		Ga0059261_1940	0.24	-0.4
2,049,030	-		Ga0059261_1940	0.24	+0.5
2,049,030	-		Ga0059261_1940	0.24	+0.4
2,049,030	-		Ga0059261_1940	0.24	+0.4
2,049,030	-				+1.7
2,049,030	-		Ga0059261_1940	0.24	+0.2
2,049,030	-		Ga0059261_1940	0.24	+0.5
2,049,030	-		Ga0059261_1940	0.24	-0.1
2,049,030	-		Ga0059261_1940	0.24	+0.0
2,049,030	-		Ga0059261_1940	0.24	-1.1
2,049,030	-		Ga0059261_1940	0.24	-1.9
2,049,030	-				+2.3
2,049,030	-		Ga0059261_1940	0.24	-0.5
2,049,030	-		Ga0059261_1940	0.24	+1.0
2,049,030	-		Ga0059261_1940	0.24	+0.5
2,049,160	+		Ga0059261_1940	0.38	+0.1
2,049,302	+		Ga0059261_1940	0.52	-1.2
2,049,303	-		Ga0059261_1940	0.53	+2.0
2,049,372	+		Ga0059261_1940	0.60	+1.6
2,049,372	+		Ga0059261_1940	0.60	+0.2
2,049,373	-		Ga0059261_1940	0.60	+0.1
2,049,373	-		Ga0059261_1940	0.60	+1.0
2,049,373	-		Ga0059261_1940	0.60	-0.2
2,049,527	+		Ga0059261_1940	0.76	-0.6
2,049,527	+		Ga0059261_1940	0.76	-0.0
2,049,527	+		Ga0059261_1940	0.76	-0.6
2,049,528	-		Ga0059261_1940	0.76	-1.2
2,049,528	-		Ga0059261_1940	0.76	+0.1
2,049,540	+		Ga0059261_1940	0.77	+0.6
2,049,541	-		Ga0059261_1940	0.78	+0.0
2,049,563	+		Ga0059261_1940	0.80	+0.1
2,049,753	+				+0.7
2,049,753	+				-0.2
2,049,832	-				-0.5
2,049,905	+				+0.5
2,049,905	+				+0.1
2,049,906	-				-0.0
2,049,906	-				+1.0
2,049,906	-				-0.7
2,049,906	-				-0.3
2,049,932	+				+0.0
2,049,932	+				+0.4
2,049,933	-				+1.7
2,050,083	+		Ga0059261_1941	0.11	-0.7
2,050,083	+		Ga0059261_1941	0.11	-0.8
2,050,083	+		Ga0059261_1941	0.11	+0.0
2,050,084	-		Ga0059261_1941	0.11	-0.1
2,050,084	-		Ga0059261_1941	0.11	-0.1
2,050,084	-		Ga0059261_1941	0.11	+0.0
2,050,084	-		Ga0059261_1941	0.11	-0.4
2,050,101	+		Ga0059261_1941	0.11	-0.1
2,050,102	-		Ga0059261_1941	0.11	-0.1
2,050,102	-		Ga0059261_1941	0.11	-0.2
2,050,102	-		Ga0059261_1941	0.11	-0.2
2,050,102	-		Ga0059261_1941	0.11	-0.7
2,050,102	-		Ga0059261_1941	0.11	+1.1
2,050,102	-		Ga0059261_1941	0.11	-0.9
2,050,302	+		Ga0059261_1941	0.20	-0.1
2,050,302	+		Ga0059261_1941	0.20	-0.7
2,050,303	-		Ga0059261_1941	0.20	-0.3
2,050,303	-		Ga0059261_1941	0.20	+0.3
2,050,317	+		Ga0059261_1941	0.20	-0.2
2,050,318	-		Ga0059261_1941	0.20	-2.5
2,050,419	+				-0.3
2,050,420	-		Ga0059261_1941	0.24	-0.4
2,050,420	-		Ga0059261_1941	0.24	+0.7
2,050,420	-		Ga0059261_1941	0.24	+2.7
2,050,420	-		Ga0059261_1941	0.24	-0.6
2,050,420	-		Ga0059261_1941	0.24	+2.7
2,050,420	-		Ga0059261_1941	0.24	-0.4
2,050,420	-		Ga0059261_1941	0.24	-1.7
2,050,429	+		Ga0059261_1941	0.25	+0.7
2,050,429	+		Ga0059261_1941	0.25	-0.3
2,050,429	+		Ga0059261_1941	0.25	+0.1
2,050,429	+		Ga0059261_1941	0.25	-0.9
2,050,429	+		Ga0059261_1941	0.25	+0.3
2,050,429	+		Ga0059261_1941	0.25	+1.0
2,050,429	+		Ga0059261_1941	0.25	+0.6
2,050,429	+		Ga0059261_1941	0.25	-0.2
2,050,430	-		Ga0059261_1941	0.25	-0.5
2,050,430	-		Ga0059261_1941	0.25	-0.1
2,050,430	-		Ga0059261_1941	0.25	+0.5
2,050,430	-		Ga0059261_1941	0.25	-0.3
2,050,430	-		Ga0059261_1941	0.25	+0.7
2,050,430	-		Ga0059261_1941	0.25	-0.7
2,050,618	+		Ga0059261_1941	0.33	+0.2
2,050,619	-		Ga0059261_1941	0.33	-0.3
2,050,619	-		Ga0059261_1941	0.33	-0.2
2,050,619	-		Ga0059261_1941	0.33	-0.5
2,050,620	+		Ga0059261_1941	0.33	-0.1
2,050,620	+		Ga0059261_1941	0.33	+0.2
2,050,620	+		Ga0059261_1941	0.33	+0.0
2,050,620	+		Ga0059261_1941	0.33	-0.2
2,050,620	+		Ga0059261_1941	0.33	-0.2
2,050,620	+		Ga0059261_1941	0.33	-0.5
2,050,620	+		Ga0059261_1941	0.33	+1.6
2,050,620	+		Ga0059261_1941	0.33	+1.4
2,050,620	+		Ga0059261_1941	0.33	-0.6
2,050,620	+		Ga0059261_1941	0.33	+0.3
2,050,621	-		Ga0059261_1941	0.33	+0.6
2,050,621	-		Ga0059261_1941	0.33	-0.3
2,050,621	-		Ga0059261_1941	0.33	-0.2
2,050,621	-		Ga0059261_1941	0.33	+0.9
2,050,621	-		Ga0059261_1941	0.33	+0.2
2,050,621	-		Ga0059261_1941	0.33	-0.2
2,050,621	-		Ga0059261_1941	0.33	+0.0
2,050,909	-		Ga0059261_1941	0.45	-0.9
2,050,909	-				+3.7
2,050,984	-		Ga0059261_1941	0.48	-0.1
2,051,000	+		Ga0059261_1941	0.49	+0.7
2,051,000	+		Ga0059261_1941	0.49	+0.1
2,051,000	+		Ga0059261_1941	0.49	+1.1
2,051,001	-		Ga0059261_1941	0.49	-0.8
2,051,001	-		Ga0059261_1941	0.49	+1.0
2,051,001	-		Ga0059261_1941	0.49	-0.3
2,051,001	-		Ga0059261_1941	0.49	-0.1
2,051,001	-				+0.7
2,051,152	-		Ga0059261_1941	0.55	+1.3
2,051,171	+		Ga0059261_1941	0.56	-0.1
2,051,171	+		Ga0059261_1941	0.56	+1.0
2,051,423	+		Ga0059261_1941	0.66	+1.1
2,051,423	+		Ga0059261_1941	0.66	+0.4
2,051,424	-		Ga0059261_1941	0.66	-0.6
2,051,529	+		Ga0059261_1941	0.71	+0.3
2,051,529	+		Ga0059261_1941	0.71	+0.8
2,051,529	+		Ga0059261_1941	0.71	+0.7
2,051,530	-		Ga0059261_1941	0.71	+1.1
2,051,530	-		Ga0059261_1941	0.71	-0.2
2,051,530	-		Ga0059261_1941	0.71	-0.4
2,051,530	-		Ga0059261_1941	0.71	-0.6
2,051,838	+		Ga0059261_1941	0.83	+0.4
2,051,838	+				+1.7
2,051,839	-		Ga0059261_1941	0.83	-0.5
2,051,839	-		Ga0059261_1941	0.83	-0.0
2,051,839	-		Ga0059261_1941	0.83	+0.7
2,051,839	-		Ga0059261_1941	0.83	+1.7
2,051,839	-		Ga0059261_1941	0.83	-0.6
2,052,028	+				+0.1
2,052,028	+				+0.2
2,052,028	+				-0.7
2,052,029	-				+0.7
2,052,029	-				-2.3
2,052,029	-				+0.7
2,052,029	-				+0.3
2,052,029	-				+1.6
2,052,029	-				-0.1
2,052,029	-				+0.2
2,052,029	-				-0.9
2,052,030	+				+0.5
2,052,030	+				-0.6
2,052,030	+				+0.6
2,052,030	+				+0.8
2,052,030	+				-0.1
2,052,030	+				+0.9
2,052,030	+				-0.6
2,052,030	+				-2.3
2,052,031	-				+0.0
2,052,031	-				-0.3
2,052,031	-				-2.2
2,052,031	-				+0.1
2,052,031	-				+0.4
2,052,031	-				-0.6
2,052,031	-				-0.1
2,052,031	-				+0.6
2,052,031	-				+0.8
2,052,031	-				-0.4
2,052,031	-				+0.3
2,052,031	-				-0.4
2,052,249	+				-1.3
2,052,249	+				-1.4
2,052,249	+				+0.2
2,052,250	-				-1.9
2,052,250	-				-0.7
2,052,250	-				+0.6
2,052,250	-				+0.1
2,052,250	-				-0.2
2,052,251	+				-0.3
2,052,251	+				+0.0
2,052,251	+				-0.3
2,052,251	+				-0.1
2,052,251	+				+0.5
2,052,251	+				+0.1
2,052,251	+				-0.3
2,052,251	+				+0.5
2,052,251	+				-0.1
2,052,251	+				-0.7
2,052,251	+				+0.2
2,052,251	+				-0.6
2,052,251	+				-0.6
2,052,252	-				-0.2
2,052,252	-				-1.0
2,052,252	-				+0.6
2,052,252	-				-0.0
2,052,252	-				+0.2
2,052,265	-				+0.4
2,052,265	-				-1.1
2,052,287	+				+0.8
2,052,317	+				-0.4
2,052,317	+				+0.7
2,052,317	+				+1.7
2,052,317	+				+0.1
2,052,317	+				+1.0
2,052,317	+				+0.0
2,052,317	+				-0.2
2,052,318	-				+0.7
2,052,318	-				-0.6
2,052,318	-				+0.3
2,052,477	-		Ga0059261_1942	0.53	+0.7
2,052,477	-				+1.7
2,052,486	-		Ga0059261_1942	0.56	+0.7
2,052,497	+		Ga0059261_1942	0.59	+0.3
2,052,497	+		Ga0059261_1942	0.59	-1.2
2,052,497	+		Ga0059261_1942	0.59	+0.7
2,052,497	+		Ga0059261_1942	0.59	-0.0
2,052,497	+		Ga0059261_1942	0.59	+0.6
2,052,497	+		Ga0059261_1942	0.59	+0.1
2,052,497	+		Ga0059261_1942	0.59	-1.3
2,052,497	+		Ga0059261_1942	0.59	+0.7
2,052,498	-		Ga0059261_1942	0.59	-1.3
2,052,498	-		Ga0059261_1942	0.59	-0.6
2,052,498	-		Ga0059261_1942	0.59	-0.1
2,052,498	-		Ga0059261_1942	0.59	-0.0
2,052,498	-		Ga0059261_1942	0.59	-0.3
2,052,498	-		Ga0059261_1942	0.59	+0.2
2,052,498	-		Ga0059261_1942	0.59	-0.3
2,052,790	-		Ga0059261_1943	0.23	+0.2
2,052,944	+		Ga0059261_1943	0.45	+0.9
2,052,944	+		Ga0059261_1943	0.45	+0.0
2,052,944	+		Ga0059261_1943	0.45	+0.6
2,052,944	+		Ga0059261_1943	0.45	-0.7
2,052,944	+		Ga0059261_1943	0.45	-0.7
2,052,944	+		Ga0059261_1943	0.45	+0.5
2,052,945	-		Ga0059261_1943	0.45	+1.5
2,052,945	-				-0.6
2,052,945	-		Ga0059261_1943	0.45	-0.5
2,052,945	-		Ga0059261_1943	0.45	+0.8
2,052,945	-		Ga0059261_1943	0.45	+0.2
2,052,945	-		Ga0059261_1943	0.45	-0.7
2,053,089	+		Ga0059261_1943	0.65	-0.9
2,053,089	+		Ga0059261_1943	0.65	+0.4
2,053,090	-		Ga0059261_1943	0.65	+0.2
2,053,090	-		Ga0059261_1943	0.65	-0.1
2,053,164	+				+0.7
2,053,164	+		Ga0059261_1943	0.75	+0.1
2,053,164	+		Ga0059261_1943	0.75	+0.6
2,053,165	-		Ga0059261_1943	0.75	-0.9
2,053,165	-		Ga0059261_1943	0.75	+0.2
2,053,165	-		Ga0059261_1943	0.75	-0.3
2,053,198	-		Ga0059261_1943	0.80	-0.4
2,053,198	-		Ga0059261_1943	0.80	+0.6