Experiment: PYE with Cisplatin 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02296 and CCNA_02297 are separated by 138 nucleotides CCNA_02297 and CCNA_02298 overlap by 59 nucleotides CCNA_02298 and CCNA_02299 are separated by 58 nucleotides
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861
_02297
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
Position (kb)
2444
2445 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2443.582 kb on + strand, within CCNA_02296 at 2443.715 kb on + strand, within CCNA_02296 at 2444.154 kb on - strand at 2444.202 kb on - strand at 2444.215 kb on + strand at 2444.223 kb on - strand at 2444.304 kb on - strand at 2444.387 kb on - strand, within CCNA_02297 at 2444.448 kb on - strand, within CCNA_02297 at 2444.481 kb on - strand, within CCNA_02297 at 2444.509 kb on + strand, within CCNA_02297 at 2444.578 kb on - strand, within CCNA_02297 at 2444.606 kb on + strand, within CCNA_02297 at 2444.640 kb on - strand, within CCNA_02297 at 2444.646 kb on - strand, within CCNA_02297 at 2444.650 kb on + strand, within CCNA_02297 at 2444.655 kb on + strand, within CCNA_02297 at 2444.661 kb on - strand, within CCNA_02297 at 2444.691 kb on - strand, within CCNA_02297 at 2444.697 kb on + strand, within CCNA_02297 at 2444.705 kb on - strand, within CCNA_02297 at 2444.771 kb on - strand, within CCNA_02297 at 2444.791 kb on + strand, within CCNA_02297 at 2444.837 kb on - strand at 2444.865 kb on - strand at 2444.871 kb on + strand at 2444.895 kb on + strand at 2444.954 kb on + strand, within CCNA_02298 at 2444.971 kb on + strand, within CCNA_02298 at 2445.119 kb on - strand, within CCNA_02298 at 2445.132 kb on - strand, within CCNA_02298 at 2445.147 kb on - strand, within CCNA_02298 at 2445.178 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.200 kb on - strand, within CCNA_02298 at 2445.226 kb on + strand, within CCNA_02298 at 2445.238 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.246 kb on - strand, within CCNA_02298 at 2445.273 kb on + strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.339 kb on + strand, within CCNA_02298 at 2445.355 kb on + strand, within CCNA_02298 at 2445.363 kb on - strand, within CCNA_02298 at 2445.408 kb on - strand, within CCNA_02298 at 2445.508 kb on + strand, within CCNA_02298 at 2445.595 kb on - strand, within CCNA_02298 at 2445.607 kb on + strand, within CCNA_02298 at 2445.614 kb on - strand, within CCNA_02298 at 2445.615 kb on - strand, within CCNA_02298 at 2445.691 kb on - strand at 2445.717 kb on + strand at 2445.735 kb on - strand at 2445.831 kb on + strand at 2445.836 kb on + strand at 2445.841 kb on + strand at 2445.844 kb on - strand at 2445.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.0025 mg/ml remove 2,443,582 + CCNA_02296 0.56 -0.2 2,443,715 + CCNA_02296 0.66 -0.4 2,444,154 - -0.5 2,444,202 - -0.1 2,444,215 + -2.6 2,444,223 - -2.0 2,444,304 - +0.7 2,444,387 - CCNA_02297 0.18 +0.5 2,444,448 - CCNA_02297 0.29 +0.9 2,444,481 - CCNA_02297 0.35 +0.4 2,444,509 + CCNA_02297 0.39 -1.7 2,444,578 - CCNA_02297 0.51 +1.3 2,444,606 + CCNA_02297 0.56 +0.1 2,444,640 - CCNA_02297 0.62 -0.4 2,444,646 - CCNA_02297 0.63 +0.6 2,444,650 + CCNA_02297 0.64 +0.9 2,444,655 + CCNA_02297 0.64 -1.2 2,444,661 - CCNA_02297 0.65 +1.1 2,444,691 - CCNA_02297 0.71 +1.9 2,444,697 + CCNA_02297 0.72 +0.4 2,444,705 - CCNA_02297 0.73 +1.9 2,444,771 - CCNA_02297 0.84 +0.7 2,444,791 + CCNA_02297 0.88 -1.2 2,444,837 - +0.9 2,444,865 - +1.3 2,444,871 + +0.6 2,444,895 + +1.7 2,444,954 + CCNA_02298 0.16 -0.6 2,444,971 + CCNA_02298 0.17 +0.0 2,445,119 - CCNA_02298 0.33 +0.1 2,445,132 - CCNA_02298 0.34 +1.1 2,445,147 - CCNA_02298 0.36 +0.2 2,445,178 - CCNA_02298 0.39 +0.9 2,445,195 - CCNA_02298 0.41 +0.5 2,445,195 - CCNA_02298 0.41 +0.4 2,445,200 - CCNA_02298 0.41 +0.0 2,445,226 + CCNA_02298 0.44 -1.4 2,445,238 + CCNA_02298 0.45 -1.4 2,445,245 + CCNA_02298 0.46 -2.3 2,445,245 + CCNA_02298 0.46 +0.1 2,445,246 - CCNA_02298 0.46 +1.0 2,445,273 + CCNA_02298 0.49 -2.3 2,445,281 - CCNA_02298 0.50 +0.6 2,445,281 - CCNA_02298 0.50 +1.4 2,445,281 - CCNA_02298 0.50 +0.5 2,445,281 - CCNA_02298 0.50 +1.1 2,445,281 - CCNA_02298 0.50 +0.7 2,445,339 + CCNA_02298 0.56 -0.6 2,445,355 + CCNA_02298 0.57 -0.9 2,445,363 - CCNA_02298 0.58 +0.5 2,445,408 - CCNA_02298 0.63 +1.1 2,445,508 + CCNA_02298 0.73 -1.7 2,445,595 - CCNA_02298 0.82 +0.2 2,445,607 + CCNA_02298 0.84 +0.1 2,445,614 - CCNA_02298 0.84 +0.9 2,445,615 - CCNA_02298 0.85 +1.2 2,445,691 - +0.3 2,445,717 + +1.7 2,445,735 - -0.9 2,445,831 + -1.0 2,445,836 + +1.1 2,445,841 + -0.2 2,445,844 - -1.9 2,445,844 - +2.1
Or see this region's nucleotide sequence