Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29780

Experiment: Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29780 and AZOBR_RS29785 are separated by 112 nucleotides AZOBR_RS29780: AZOBR_RS29780 - acyl-CoA dehydrogenase, at 29,971 to 31,659 _RS29780 AZOBR_RS29785: AZOBR_RS29785 - hypothetical protein, at 31,772 to 32,692 _RS29785 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.093 kb on - strandat 29.357 kb on - strandat 29.357 kb on - strandat 29.357 kb on - strandat 29.357 kb on - strandat 29.554 kb on + strandat 29.624 kb on - strandat 30.721 kb on + strand, within AZOBR_RS29780at 30.721 kb on + strand, within AZOBR_RS29780at 30.918 kb on + strand, within AZOBR_RS29780at 30.919 kb on - strand, within AZOBR_RS29780at 30.919 kb on - strand, within AZOBR_RS29780at 30.922 kb on + strand, within AZOBR_RS29780at 30.922 kb on + strand, within AZOBR_RS29780at 30.922 kb on + strand, within AZOBR_RS29780at 30.923 kb on - strand, within AZOBR_RS29780at 30.923 kb on - strand, within AZOBR_RS29780at 31.135 kb on + strand, within AZOBR_RS29780at 31.136 kb on - strand, within AZOBR_RS29780at 31.301 kb on - strand, within AZOBR_RS29780at 31.409 kb on - strand, within AZOBR_RS29780at 31.590 kb on + strandat 31.727 kb on - strandat 31.794 kb on - strandat 31.916 kb on + strand, within AZOBR_RS29785at 31.917 kb on - strand, within AZOBR_RS29785at 31.917 kb on - strand, within AZOBR_RS29785at 32.120 kb on + strand, within AZOBR_RS29785at 32.120 kb on + strand, within AZOBR_RS29785at 32.121 kb on - strand, within AZOBR_RS29785at 32.121 kb on - strand, within AZOBR_RS29785at 32.211 kb on - strand, within AZOBR_RS29785at 32.211 kb on - strand, within AZOBR_RS29785at 32.595 kb on + strand, within AZOBR_RS29785

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
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29,093 - -3.2
29,357 - -0.3
29,357 - +0.3
29,357 - -0.1
29,357 - -0.8
29,554 + -0.1
29,624 - -0.3
30,721 + AZOBR_RS29780 0.44 -0.5
30,721 + AZOBR_RS29780 0.44 +1.6
30,918 + AZOBR_RS29780 0.56 +0.5
30,919 - AZOBR_RS29780 0.56 -0.8
30,919 - AZOBR_RS29780 0.56 -1.1
30,922 + AZOBR_RS29780 0.56 -1.4
30,922 + AZOBR_RS29780 0.56 +2.0
30,922 + AZOBR_RS29780 0.56 -1.7
30,923 - AZOBR_RS29780 0.56 +0.2
30,923 - AZOBR_RS29780 0.56 +0.2
31,135 + AZOBR_RS29780 0.69 -1.2
31,136 - AZOBR_RS29780 0.69 +0.6
31,301 - AZOBR_RS29780 0.79 -0.9
31,409 - AZOBR_RS29780 0.85 -0.2
31,590 + -0.1
31,727 - -1.2
31,794 - -0.8
31,916 + AZOBR_RS29785 0.16 -0.1
31,917 - AZOBR_RS29785 0.16 -0.6
31,917 - AZOBR_RS29785 0.16 -1.2
32,120 + AZOBR_RS29785 0.38 -0.1
32,120 + AZOBR_RS29785 0.38 +0.3
32,121 - AZOBR_RS29785 0.38 -1.3
32,121 - AZOBR_RS29785 0.38 +0.1
32,211 - AZOBR_RS29785 0.48 +0.4
32,211 - AZOBR_RS29785 0.48 +0.2
32,595 + AZOBR_RS29785 0.89 -0.6

Or see this region's nucleotide sequence