Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28380

Experiment: Cobalt chloride 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS28380 and AZOBR_RS28385 are separated by 18 nucleotides AZOBR_RS28380: AZOBR_RS28380 - glycosyltransferase, at 540,004 to 541,101 _RS28380 AZOBR_RS28385: AZOBR_RS28385 - membrane protein, at 541,120 to 541,629 _RS28385 Position (kb) 540 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 539.100 kb on - strandat 539.247 kb on - strandat 539.247 kb on - strandat 539.412 kb on - strandat 539.564 kb on + strandat 539.564 kb on + strandat 539.564 kb on + strandat 539.565 kb on - strandat 539.565 kb on - strandat 539.565 kb on - strandat 539.565 kb on - strandat 539.912 kb on - strandat 539.930 kb on + strandat 539.930 kb on + strandat 539.931 kb on - strandat 539.931 kb on - strandat 539.931 kb on - strandat 540.140 kb on - strand, within AZOBR_RS28380at 540.190 kb on + strand, within AZOBR_RS28380at 540.190 kb on + strand, within AZOBR_RS28380at 540.191 kb on - strand, within AZOBR_RS28380at 540.262 kb on + strand, within AZOBR_RS28380at 540.262 kb on + strand, within AZOBR_RS28380at 540.262 kb on + strand, within AZOBR_RS28380at 540.263 kb on - strand, within AZOBR_RS28380at 540.328 kb on + strand, within AZOBR_RS28380at 540.328 kb on + strand, within AZOBR_RS28380at 540.328 kb on + strand, within AZOBR_RS28380at 540.329 kb on - strand, within AZOBR_RS28380at 540.382 kb on + strand, within AZOBR_RS28380at 540.382 kb on + strand, within AZOBR_RS28380at 540.383 kb on - strand, within AZOBR_RS28380at 540.383 kb on - strand, within AZOBR_RS28380at 540.383 kb on - strand, within AZOBR_RS28380at 540.410 kb on - strand, within AZOBR_RS28380at 540.418 kb on + strand, within AZOBR_RS28380at 540.418 kb on + strand, within AZOBR_RS28380at 540.419 kb on - strand, within AZOBR_RS28380at 540.419 kb on - strand, within AZOBR_RS28380at 540.419 kb on - strand, within AZOBR_RS28380at 540.419 kb on - strand, within AZOBR_RS28380at 540.419 kb on - strand, within AZOBR_RS28380at 540.466 kb on + strand, within AZOBR_RS28380at 540.556 kb on + strand, within AZOBR_RS28380at 540.556 kb on + strand, within AZOBR_RS28380at 540.568 kb on + strand, within AZOBR_RS28380at 540.568 kb on + strand, within AZOBR_RS28380at 540.569 kb on - strand, within AZOBR_RS28380at 540.661 kb on + strand, within AZOBR_RS28380at 540.661 kb on + strand, within AZOBR_RS28380at 540.736 kb on + strand, within AZOBR_RS28380at 540.737 kb on - strand, within AZOBR_RS28380at 540.737 kb on - strand, within AZOBR_RS28380at 540.737 kb on - strand, within AZOBR_RS28380at 541.074 kb on + strandat 541.085 kb on + strandat 541.085 kb on + strandat 541.086 kb on - strandat 541.508 kb on + strand, within AZOBR_RS28385at 541.658 kb on + strandat 541.658 kb on + strandat 541.659 kb on - strandat 541.659 kb on - strandat 541.729 kb on + strandat 541.730 kb on - strandat 541.738 kb on + strandat 541.738 kb on + strandat 541.738 kb on + strandat 541.738 kb on + strandat 541.738 kb on + strandat 541.738 kb on + strandat 541.739 kb on - strandat 541.739 kb on - strandat 541.739 kb on - strandat 541.739 kb on - strandat 541.739 kb on - strandat 541.802 kb on - strandat 541.802 kb on - strandat 541.843 kb on - strandat 541.902 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
remove
539,100 - -1.9
539,247 - +1.2
539,247 - -0.2
539,412 - -0.2
539,564 + -1.9
539,564 + -1.4
539,564 + +0.4
539,565 - +2.5
539,565 - +0.4
539,565 - -0.7
539,565 - -0.0
539,912 - -0.8
539,930 + +0.2
539,930 + +0.0
539,931 - +0.5
539,931 - +0.5
539,931 - +0.8
540,140 - AZOBR_RS28380 0.12 -0.0
540,190 + AZOBR_RS28380 0.17 +1.3
540,190 + AZOBR_RS28380 0.17 -1.8
540,191 - AZOBR_RS28380 0.17 +0.8
540,262 + AZOBR_RS28380 0.23 +0.2
540,262 + AZOBR_RS28380 0.23 +0.6
540,262 + AZOBR_RS28380 0.23 +0.1
540,263 - AZOBR_RS28380 0.24 -0.1
540,328 + AZOBR_RS28380 0.30 -1.7
540,328 + AZOBR_RS28380 0.30 -0.8
540,328 + AZOBR_RS28380 0.30 -0.3
540,329 - AZOBR_RS28380 0.30 +1.6
540,382 + AZOBR_RS28380 0.34 +0.7
540,382 + AZOBR_RS28380 0.34 +1.6
540,383 - AZOBR_RS28380 0.35 -2.0
540,383 - AZOBR_RS28380 0.35 +0.1
540,383 - AZOBR_RS28380 0.35 +1.3
540,410 - AZOBR_RS28380 0.37 +0.2
540,418 + AZOBR_RS28380 0.38 +0.5
540,418 + AZOBR_RS28380 0.38 -0.3
540,419 - AZOBR_RS28380 0.38 +0.7
540,419 - AZOBR_RS28380 0.38 -1.8
540,419 - AZOBR_RS28380 0.38 +1.0
540,419 - AZOBR_RS28380 0.38 +0.7
540,419 - AZOBR_RS28380 0.38 +0.6
540,466 + AZOBR_RS28380 0.42 -2.1
540,556 + AZOBR_RS28380 0.50 +0.2
540,556 + AZOBR_RS28380 0.50 +1.0
540,568 + AZOBR_RS28380 0.51 +0.7
540,568 + AZOBR_RS28380 0.51 -0.7
540,569 - AZOBR_RS28380 0.51 +0.7
540,661 + AZOBR_RS28380 0.60 +1.0
540,661 + AZOBR_RS28380 0.60 -0.8
540,736 + AZOBR_RS28380 0.67 +0.0
540,737 - AZOBR_RS28380 0.67 -0.3
540,737 - AZOBR_RS28380 0.67 +2.4
540,737 - AZOBR_RS28380 0.67 +1.0
541,074 + -1.9
541,085 + -1.1
541,085 + -0.5
541,086 - -0.4
541,508 + AZOBR_RS28385 0.76 +0.1
541,658 + +0.0
541,658 + -0.0
541,659 - +0.7
541,659 - -0.1
541,729 + -0.1
541,730 - +0.0
541,738 + -3.8
541,738 + +0.9
541,738 + -0.9
541,738 + +0.0
541,738 + +1.0
541,738 + -1.0
541,739 - +0.9
541,739 - -0.2
541,739 - -2.0
541,739 - +0.1
541,739 - +0.4
541,802 - +0.7
541,802 - -1.1
541,843 - +0.5
541,902 + -0.1

Or see this region's nucleotide sequence