Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22740

Experiment: Cobalt chloride 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22730 and AZOBR_RS22740 are separated by 962 nucleotidesAZOBR_RS22740 and AZOBR_RS22745 are separated by 280 nucleotides AZOBR_RS22730: AZOBR_RS22730 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 108,419 to 109,069 _RS22730 AZOBR_RS22740: AZOBR_RS22740 - transcriptional regulator, at 110,032 to 110,871 _RS22740 AZOBR_RS22745: AZOBR_RS22745 - ATPase AAA, at 111,152 to 113,818 _RS22745 Position (kb) 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1at 109.193 kb on + strandat 109.310 kb on + strandat 109.311 kb on - strandat 109.311 kb on - strandat 109.530 kb on + strandat 109.530 kb on + strandat 109.530 kb on + strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.531 kb on - strandat 109.699 kb on - strandat 109.798 kb on - strandat 110.144 kb on + strand, within AZOBR_RS22740at 110.144 kb on + strand, within AZOBR_RS22740at 110.144 kb on + strand, within AZOBR_RS22740at 110.270 kb on + strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.271 kb on - strand, within AZOBR_RS22740at 110.358 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.649 kb on - strand, within AZOBR_RS22740at 110.653 kb on + strand, within AZOBR_RS22740at 110.654 kb on - strand, within AZOBR_RS22740at 110.871 kb on + strandat 110.872 kb on - strandat 110.907 kb on + strandat 110.926 kb on - strandat 111.134 kb on + strandat 111.644 kb on + strand, within AZOBR_RS22745at 111.645 kb on - strand, within AZOBR_RS22745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
remove
109,193 + -1.0
109,310 + -0.2
109,311 - +0.3
109,311 - -0.0
109,530 + +0.4
109,530 + -0.1
109,530 + -0.4
109,531 - -2.5
109,531 - +0.6
109,531 - +0.4
109,531 - -0.4
109,531 - -0.5
109,531 - -0.2
109,531 - +0.1
109,699 - +0.1
109,798 - +1.2
110,144 + AZOBR_RS22740 0.13 +0.4
110,144 + AZOBR_RS22740 0.13 -0.2
110,144 + AZOBR_RS22740 0.13 -0.4
110,270 + AZOBR_RS22740 0.28 -1.1
110,271 - AZOBR_RS22740 0.28 -0.1
110,271 - AZOBR_RS22740 0.28 +0.3
110,271 - AZOBR_RS22740 0.28 +0.2
110,358 - AZOBR_RS22740 0.39 +0.5
110,649 - AZOBR_RS22740 0.73 +0.6
110,649 - AZOBR_RS22740 0.73 +0.4
110,649 - AZOBR_RS22740 0.73 -0.5
110,653 + AZOBR_RS22740 0.74 -2.1
110,654 - AZOBR_RS22740 0.74 -0.2
110,871 + +0.9
110,872 - +0.1
110,907 + +0.2
110,926 - -3.4
111,134 + -0.6
111,644 + AZOBR_RS22745 0.18 -0.8
111,645 - AZOBR_RS22745 0.18 +0.1

Or see this region's nucleotide sequence