Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20810

Experiment: Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20805 and AZOBR_RS20810 are separated by 89 nucleotidesAZOBR_RS20810 and AZOBR_RS20815 are separated by 455 nucleotides AZOBR_RS20805: AZOBR_RS20805 - hypothetical protein, at 1,421,977 to 1,422,972 _RS20805 AZOBR_RS20810: AZOBR_RS20810 - hemolysin, at 1,423,062 to 1,423,814 _RS20810 AZOBR_RS20815: AZOBR_RS20815 - CRISPR-associated protein, at 1,424,270 to 1,424,941 _RS20815 Position (kb) 1423 1424Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1422.577 kb on + strand, within AZOBR_RS20805at 1422.733 kb on + strand, within AZOBR_RS20805at 1422.734 kb on - strandat 1422.734 kb on - strand, within AZOBR_RS20805at 1422.734 kb on - strand, within AZOBR_RS20805at 1422.739 kb on + strand, within AZOBR_RS20805at 1422.740 kb on - strand, within AZOBR_RS20805at 1423.380 kb on + strand, within AZOBR_RS20810at 1423.526 kb on + strand, within AZOBR_RS20810at 1423.857 kb on - strandat 1423.926 kb on + strandat 1423.949 kb on + strandat 1424.023 kb on + strandat 1424.066 kb on + strandat 1424.287 kb on - strandat 1424.287 kb on - strandat 1424.352 kb on - strand, within AZOBR_RS20815at 1424.352 kb on - strand, within AZOBR_RS20815at 1424.362 kb on + strand, within AZOBR_RS20815at 1424.362 kb on + strand, within AZOBR_RS20815at 1424.438 kb on + strand, within AZOBR_RS20815at 1424.438 kb on + strand, within AZOBR_RS20815at 1424.438 kb on + strand, within AZOBR_RS20815at 1424.439 kb on - strand, within AZOBR_RS20815at 1424.439 kb on - strand, within AZOBR_RS20815at 1424.439 kb on - strand, within AZOBR_RS20815at 1424.609 kb on + strand, within AZOBR_RS20815at 1424.610 kb on - strand, within AZOBR_RS20815at 1424.610 kb on - strand, within AZOBR_RS20815at 1424.610 kb on - strand, within AZOBR_RS20815at 1424.610 kb on - strand, within AZOBR_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
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1,422,577 + AZOBR_RS20805 0.60 +0.4
1,422,733 + AZOBR_RS20805 0.76 -0.5
1,422,734 - +2.1
1,422,734 - AZOBR_RS20805 0.76 +1.4
1,422,734 - AZOBR_RS20805 0.76 +1.4
1,422,739 + AZOBR_RS20805 0.77 +0.2
1,422,740 - AZOBR_RS20805 0.77 +0.7
1,423,380 + AZOBR_RS20810 0.42 +1.0
1,423,526 + AZOBR_RS20810 0.62 +0.6
1,423,857 - +1.0
1,423,926 + -2.1
1,423,949 + -3.0
1,424,023 + +0.4
1,424,066 + +0.1
1,424,287 - -0.3
1,424,287 - -0.5
1,424,352 - AZOBR_RS20815 0.12 +0.9
1,424,352 - AZOBR_RS20815 0.12 +1.0
1,424,362 + AZOBR_RS20815 0.14 -0.2
1,424,362 + AZOBR_RS20815 0.14 +0.9
1,424,438 + AZOBR_RS20815 0.25 -1.9
1,424,438 + AZOBR_RS20815 0.25 -0.7
1,424,438 + AZOBR_RS20815 0.25 -0.5
1,424,439 - AZOBR_RS20815 0.25 -0.3
1,424,439 - AZOBR_RS20815 0.25 -0.6
1,424,439 - AZOBR_RS20815 0.25 +0.4
1,424,609 + AZOBR_RS20815 0.50 -1.0
1,424,610 - AZOBR_RS20815 0.51 +1.1
1,424,610 - AZOBR_RS20815 0.51 +1.7
1,424,610 - AZOBR_RS20815 0.51 +1.3
1,424,610 - AZOBR_RS20815 0.51 -1.3

Or see this region's nucleotide sequence