Experiment: Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08970 and AZOBR_RS08975 are separated by 95 nucleotides AZOBR_RS08975 and AZOBR_RS08980 overlap by 29 nucleotides AZOBR_RS08980 and AZOBR_RS08985 are separated by 244 nucleotides AZOBR_RS08985 and AZOBR_RS08990 are separated by 123 nucleotides
AZOBR_RS08970: AZOBR_RS08970 - short-chain dehydrogenase, at 1,876,786 to 1,877,556
_RS08970
AZOBR_RS08975: AZOBR_RS08975 - hypothetical protein, at 1,877,652 to 1,878,452
_RS08975
AZOBR_RS08980: AZOBR_RS08980 - hypothetical protein, at 1,878,424 to 1,878,714
_RS08980
AZOBR_RS08985: AZOBR_RS08985 - 5S ribosomal RNA, at 1,878,959 to 1,879,074
_RS08985
AZOBR_RS08990: AZOBR_RS08990 - 23S ribosomal RNA, at 1,879,198 to 1,881,950
_RS08990
Position (kb)
1877
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1 at 1876.702 kb on + strand at 1876.702 kb on + strand at 1876.702 kb on + strand at 1876.703 kb on - strand at 1877.090 kb on + strand, within AZOBR_RS08970 at 1877.090 kb on + strand, within AZOBR_RS08970 at 1877.091 kb on - strand, within AZOBR_RS08970 at 1877.091 kb on - strand, within AZOBR_RS08970 at 1877.223 kb on + strand, within AZOBR_RS08970 at 1877.223 kb on + strand, within AZOBR_RS08970 at 1877.223 kb on + strand, within AZOBR_RS08970 at 1877.224 kb on - strand, within AZOBR_RS08970 at 1877.224 kb on - strand, within AZOBR_RS08970 at 1877.564 kb on + strand at 1877.565 kb on - strand at 1877.565 kb on - strand at 1877.565 kb on - strand at 1877.568 kb on + strand at 1877.568 kb on + strand at 1877.568 kb on + strand at 1877.673 kb on + strand at 1877.674 kb on - strand at 1877.716 kb on - strand at 1878.248 kb on + strand, within AZOBR_RS08975 at 1878.512 kb on + strand, within AZOBR_RS08980 at 1878.512 kb on + strand, within AZOBR_RS08980 at 1878.513 kb on - strand, within AZOBR_RS08980 at 1878.715 kb on - strand at 1878.761 kb on - strand at 1878.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM remove 1,876,702 + -0.1 1,876,702 + +0.4 1,876,702 + +0.4 1,876,703 - -0.0 1,877,090 + AZOBR_RS08970 0.39 -0.3 1,877,090 + AZOBR_RS08970 0.39 -0.5 1,877,091 - AZOBR_RS08970 0.40 -1.2 1,877,091 - AZOBR_RS08970 0.40 -0.4 1,877,223 + AZOBR_RS08970 0.57 -0.0 1,877,223 + AZOBR_RS08970 0.57 -1.0 1,877,223 + AZOBR_RS08970 0.57 -1.5 1,877,224 - AZOBR_RS08970 0.57 +0.4 1,877,224 - AZOBR_RS08970 0.57 -1.0 1,877,564 + -0.0 1,877,565 - -0.6 1,877,565 - +0.1 1,877,565 - -1.1 1,877,568 + +0.3 1,877,568 + -2.0 1,877,568 + -0.3 1,877,673 + +0.3 1,877,674 - -0.2 1,877,716 - +0.3 1,878,248 + AZOBR_RS08975 0.74 -0.1 1,878,512 + AZOBR_RS08980 0.30 +0.3 1,878,512 + AZOBR_RS08980 0.30 -0.1 1,878,513 - AZOBR_RS08980 0.31 -0.6 1,878,715 - -1.4 1,878,761 - -2.6 1,878,761 - -1.9
Or see this region's nucleotide sequence