Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08975

Experiment: Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08970 and AZOBR_RS08975 are separated by 95 nucleotidesAZOBR_RS08975 and AZOBR_RS08980 overlap by 29 nucleotidesAZOBR_RS08980 and AZOBR_RS08985 are separated by 244 nucleotidesAZOBR_RS08985 and AZOBR_RS08990 are separated by 123 nucleotides AZOBR_RS08970: AZOBR_RS08970 - short-chain dehydrogenase, at 1,876,786 to 1,877,556 _RS08970 AZOBR_RS08975: AZOBR_RS08975 - hypothetical protein, at 1,877,652 to 1,878,452 _RS08975 AZOBR_RS08980: AZOBR_RS08980 - hypothetical protein, at 1,878,424 to 1,878,714 _RS08980 AZOBR_RS08985: AZOBR_RS08985 - 5S ribosomal RNA, at 1,878,959 to 1,879,074 _RS08985 AZOBR_RS08990: AZOBR_RS08990 - 23S ribosomal RNA, at 1,879,198 to 1,881,950 _RS08990 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1at 1876.702 kb on + strandat 1876.702 kb on + strandat 1876.702 kb on + strandat 1876.703 kb on - strandat 1877.090 kb on + strand, within AZOBR_RS08970at 1877.090 kb on + strand, within AZOBR_RS08970at 1877.091 kb on - strand, within AZOBR_RS08970at 1877.091 kb on - strand, within AZOBR_RS08970at 1877.223 kb on + strand, within AZOBR_RS08970at 1877.223 kb on + strand, within AZOBR_RS08970at 1877.223 kb on + strand, within AZOBR_RS08970at 1877.224 kb on - strand, within AZOBR_RS08970at 1877.224 kb on - strand, within AZOBR_RS08970at 1877.564 kb on + strandat 1877.565 kb on - strandat 1877.565 kb on - strandat 1877.565 kb on - strandat 1877.568 kb on + strandat 1877.568 kb on + strandat 1877.568 kb on + strandat 1877.673 kb on + strandat 1877.674 kb on - strandat 1877.716 kb on - strandat 1878.248 kb on + strand, within AZOBR_RS08975at 1878.512 kb on + strand, within AZOBR_RS08980at 1878.512 kb on + strand, within AZOBR_RS08980at 1878.513 kb on - strand, within AZOBR_RS08980at 1878.715 kb on - strandat 1878.761 kb on - strandat 1878.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
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1,876,702 + -0.1
1,876,702 + +0.4
1,876,702 + +0.4
1,876,703 - -0.0
1,877,090 + AZOBR_RS08970 0.39 -0.3
1,877,090 + AZOBR_RS08970 0.39 -0.5
1,877,091 - AZOBR_RS08970 0.40 -1.2
1,877,091 - AZOBR_RS08970 0.40 -0.4
1,877,223 + AZOBR_RS08970 0.57 -0.0
1,877,223 + AZOBR_RS08970 0.57 -1.0
1,877,223 + AZOBR_RS08970 0.57 -1.5
1,877,224 - AZOBR_RS08970 0.57 +0.4
1,877,224 - AZOBR_RS08970 0.57 -1.0
1,877,564 + -0.0
1,877,565 - -0.6
1,877,565 - +0.1
1,877,565 - -1.1
1,877,568 + +0.3
1,877,568 + -2.0
1,877,568 + -0.3
1,877,673 + +0.3
1,877,674 - -0.2
1,877,716 - +0.3
1,878,248 + AZOBR_RS08975 0.74 -0.1
1,878,512 + AZOBR_RS08980 0.30 +0.3
1,878,512 + AZOBR_RS08980 0.30 -0.1
1,878,513 - AZOBR_RS08980 0.31 -0.6
1,878,715 - -1.4
1,878,761 - -2.6
1,878,761 - -1.9

Or see this region's nucleotide sequence