Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05290

Experiment: Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05285 and AZOBR_RS05290 are separated by 207 nucleotidesAZOBR_RS05290 and AZOBR_RS05295 are separated by 124 nucleotidesAZOBR_RS05295 and AZOBR_RS05300 overlap by 4 nucleotides AZOBR_RS05285: AZOBR_RS05285 - histidine kinase, at 1,122,138 to 1,124,213 _RS05285 AZOBR_RS05290: AZOBR_RS05290 - extradiol ring-cleavage dioxygenase, at 1,124,421 to 1,125,197 _RS05290 AZOBR_RS05295: AZOBR_RS05295 - ATP synthase subunit B, at 1,125,322 to 1,125,801 _RS05295 AZOBR_RS05300: AZOBR_RS05300 - ATPase, at 1,125,798 to 1,126,292 _RS05300 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -2 -1 0 1at 1123.475 kb on - strand, within AZOBR_RS05285at 1123.475 kb on - strand, within AZOBR_RS05285at 1123.475 kb on - strand, within AZOBR_RS05285at 1123.756 kb on + strand, within AZOBR_RS05285at 1124.241 kb on + strandat 1124.241 kb on + strandat 1124.241 kb on + strandat 1124.332 kb on + strandat 1124.333 kb on - strandat 1124.333 kb on - strandat 1124.845 kb on + strand, within AZOBR_RS05290at 1124.845 kb on + strand, within AZOBR_RS05290at 1124.845 kb on + strand, within AZOBR_RS05290at 1124.971 kb on + strand, within AZOBR_RS05290at 1124.992 kb on + strand, within AZOBR_RS05290at 1124.992 kb on + strand, within AZOBR_RS05290

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM
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1,123,475 - AZOBR_RS05285 0.64 -1.4
1,123,475 - AZOBR_RS05285 0.64 +0.1
1,123,475 - AZOBR_RS05285 0.64 -1.7
1,123,756 + AZOBR_RS05285 0.78 -1.5
1,124,241 + +0.4
1,124,241 + -0.7
1,124,241 + -0.9
1,124,332 + +0.7
1,124,333 - -0.7
1,124,333 - +0.5
1,124,845 + AZOBR_RS05290 0.55 -1.3
1,124,845 + AZOBR_RS05290 0.55 -0.2
1,124,845 + AZOBR_RS05290 0.55 -0.7
1,124,971 + AZOBR_RS05290 0.71 -0.4
1,124,992 + AZOBR_RS05290 0.73 -0.7
1,124,992 + AZOBR_RS05290 0.73 -2.4

Or see this region's nucleotide sequence