Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29090 and AO356_29095 overlap by 4 nucleotides AO356_29095 and AO356_29100 overlap by 14 nucleotides AO356_29100 and AO356_29105 overlap by 10 nucleotides AO356_29105 and AO356_29110 overlap by 4 nucleotides
AO356_29090: AO356_29090 - GntR family transcriptional regulator, at 6,764,003 to 6,764,734
_29090
AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516
_29095
AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510
_29100
AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493
_29105
AO356_29110: AO356_29110 - cupin, at 6,767,490 to 6,768,062
_29110
Position (kb) 6765
6766
6767 Strain fitness (log2 ratio) -1
0
1 at 6764.939 kb on + strand, within AO356_29095 at 6765.005 kb on + strand, within AO356_29095 at 6765.006 kb on - strand, within AO356_29095 at 6765.006 kb on - strand, within AO356_29095 at 6765.013 kb on - strand, within AO356_29095 at 6765.013 kb on - strand, within AO356_29095 at 6765.276 kb on - strand, within AO356_29095 at 6765.294 kb on + strand, within AO356_29095 at 6765.295 kb on - strand, within AO356_29095 at 6765.301 kb on - strand, within AO356_29095 at 6765.458 kb on + strand at 6765.587 kb on + strand at 6766.078 kb on - strand, within AO356_29100 at 6766.246 kb on - strand, within AO356_29100 at 6767.167 kb on - strand, within AO356_29105 at 6767.167 kb on - strand, within AO356_29105 at 6767.167 kb on - strand, within AO356_29105
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 6,764,939 + AO356_29095 0.26 -1.0 6,765,005 + AO356_29095 0.35 -0.2 6,765,006 - AO356_29095 0.35 -1.6 6,765,006 - AO356_29095 0.35 +0.1 6,765,013 - AO356_29095 0.36 +0.9 6,765,013 - AO356_29095 0.36 +0.8 6,765,276 - AO356_29095 0.69 -1.4 6,765,294 + AO356_29095 0.72 -0.7 6,765,295 - AO356_29095 0.72 -0.6 6,765,301 - AO356_29095 0.73 -0.9 6,765,458 + +1.2 6,765,587 + -1.3 6,766,078 - AO356_29100 0.57 +0.8 6,766,246 - AO356_29100 0.74 -0.3 6,767,167 - AO356_29105 0.67 +0.2 6,767,167 - AO356_29105 0.67 +0.1 6,767,167 - AO356_29105 0.67 -0.7
Or see this region's nucleotide sequence