Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24400 and AO356_24405 are separated by 179 nucleotides AO356_24405 and AO356_24410 are separated by 123 nucleotides AO356_24410 and AO356_24415 are separated by 182 nucleotides
AO356_24400: AO356_24400 - universal stress protein UspA, at 5,511,122 to 5,511,985
_24400
AO356_24405: AO356_24405 - tRNA hydroxylase, at 5,512,165 to 5,512,770
_24405
AO356_24410: AO356_24410 - alanine acetyltransferase, at 5,512,894 to 5,513,382
_24410
AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182
_24415
Position (kb) 5512
5513 Strain fitness (log2 ratio) -1
0
1
2 at 5511.182 kb on + strand at 5511.183 kb on - strand at 5511.183 kb on - strand at 5511.314 kb on + strand, within AO356_24400 at 5511.314 kb on + strand, within AO356_24400 at 5511.314 kb on + strand, within AO356_24400 at 5511.315 kb on - strand, within AO356_24400 at 5511.315 kb on - strand, within AO356_24400 at 5511.315 kb on - strand, within AO356_24400 at 5511.763 kb on - strand, within AO356_24400 at 5512.029 kb on + strand at 5512.029 kb on + strand at 5512.029 kb on + strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.031 kb on + strand at 5512.032 kb on - strand at 5512.032 kb on - strand at 5512.050 kb on + strand at 5512.051 kb on - strand at 5512.051 kb on - strand at 5512.057 kb on + strand at 5512.122 kb on - strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.124 kb on - strand at 5512.145 kb on + strand at 5512.146 kb on - strand at 5512.315 kb on + strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.634 kb on - strand, within AO356_24405 at 5512.649 kb on - strand, within AO356_24405 at 5512.654 kb on + strand, within AO356_24405 at 5512.785 kb on + strand at 5512.895 kb on + strand at 5512.896 kb on - strand at 5512.896 kb on - strand at 5512.947 kb on - strand, within AO356_24410 at 5512.947 kb on - strand, within AO356_24410 at 5513.195 kb on + strand, within AO356_24410 at 5513.196 kb on - strand, within AO356_24410 at 5513.196 kb on - strand, within AO356_24410 at 5513.300 kb on + strand, within AO356_24410 at 5513.313 kb on - strand, within AO356_24410 at 5513.405 kb on + strand at 5513.405 kb on + strand at 5513.405 kb on + strand at 5513.406 kb on - strand at 5513.406 kb on - strand at 5513.566 kb on + strand at 5513.743 kb on + strand, within AO356_24415 at 5513.744 kb on - strand, within AO356_24415
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 5,511,182 + -0.5 5,511,183 - +0.2 5,511,183 - +0.7 5,511,314 + AO356_24400 0.22 +2.7 5,511,314 + AO356_24400 0.22 +0.4 5,511,314 + AO356_24400 0.22 +0.0 5,511,315 - AO356_24400 0.22 +0.3 5,511,315 - AO356_24400 0.22 -0.5 5,511,315 - AO356_24400 0.22 +1.0 5,511,763 - AO356_24400 0.74 -0.2 5,512,029 + -0.1 5,512,029 + +0.9 5,512,029 + -0.0 5,512,030 - +0.0 5,512,030 - -0.8 5,512,030 - +0.7 5,512,030 - +0.1 5,512,031 + +0.5 5,512,032 - -0.4 5,512,032 - +0.3 5,512,050 + -0.2 5,512,051 - -0.6 5,512,051 - -0.3 5,512,057 + +0.1 5,512,122 - +0.4 5,512,123 + +0.8 5,512,123 + +0.8 5,512,123 + +0.5 5,512,123 + +0.8 5,512,124 - +1.4 5,512,145 + +1.3 5,512,146 - -0.8 5,512,315 + AO356_24405 0.25 -1.0 5,512,316 - AO356_24405 0.25 +1.4 5,512,316 - AO356_24405 0.25 -0.7 5,512,316 - AO356_24405 0.25 -0.3 5,512,316 - AO356_24405 0.25 +0.8 5,512,634 - AO356_24405 0.77 -0.1 5,512,649 - AO356_24405 0.80 -0.3 5,512,654 + AO356_24405 0.81 -0.0 5,512,785 + -0.1 5,512,895 + +0.7 5,512,896 - -1.2 5,512,896 - +0.3 5,512,947 - AO356_24410 0.11 +1.1 5,512,947 - AO356_24410 0.11 +0.8 5,513,195 + AO356_24410 0.62 +0.2 5,513,196 - AO356_24410 0.62 +1.6 5,513,196 - AO356_24410 0.62 +0.7 5,513,300 + AO356_24410 0.83 +0.1 5,513,313 - AO356_24410 0.86 +1.8 5,513,405 + +0.7 5,513,405 + +0.5 5,513,405 + +1.0 5,513,406 - +0.9 5,513,406 - +0.4 5,513,566 + +0.2 5,513,743 + AO356_24415 0.29 +0.6 5,513,744 - AO356_24415 0.29 +1.2
Or see this region's nucleotide sequence