Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23280 and AO356_23285 are separated by 204 nucleotides AO356_23285 and AO356_23290 are separated by 12 nucleotides AO356_23290 and AO356_23295 are separated by 17 nucleotides
AO356_23280: AO356_23280 - cation:proton antiporter, at 5,207,195 to 5,210,119
_23280
AO356_23285: AO356_23285 - hypothetical protein, at 5,210,324 to 5,211,328
_23285
AO356_23290: AO356_23290 - Cro/Cl family transcriptional regulator, at 5,211,341 to 5,211,904
_23290
AO356_23295: AO356_23295 - pyridine nucleotide-disulfide oxidoreductase, at 5,211,922 to 5,213,361
_23295
Position (kb) 5210
5211
5212 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5209.393 kb on - strand, within AO356_23280 at 5209.557 kb on + strand, within AO356_23280 at 5209.557 kb on + strand, within AO356_23280 at 5209.557 kb on + strand, within AO356_23280 at 5209.557 kb on + strand, within AO356_23280 at 5209.558 kb on - strand, within AO356_23280 at 5209.636 kb on + strand, within AO356_23280 at 5209.636 kb on + strand, within AO356_23280 at 5209.636 kb on + strand, within AO356_23280 at 5209.637 kb on - strand, within AO356_23280 at 5209.637 kb on - strand, within AO356_23280 at 5209.637 kb on - strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.638 kb on + strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.639 kb on - strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.824 kb on + strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.825 kb on - strand, within AO356_23280 at 5209.827 kb on + strand at 5209.836 kb on + strand at 5209.837 kb on - strand at 5209.941 kb on + strand at 5209.941 kb on + strand at 5209.941 kb on + strand at 5209.941 kb on + strand at 5209.942 kb on - strand at 5209.956 kb on - strand at 5209.981 kb on - strand at 5210.053 kb on + strand at 5210.103 kb on - strand at 5210.103 kb on - strand at 5210.108 kb on + strand at 5210.109 kb on - strand at 5210.119 kb on + strand at 5210.119 kb on + strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.120 kb on - strand at 5210.154 kb on + strand at 5210.154 kb on + strand at 5210.154 kb on + strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.163 kb on + strand at 5210.164 kb on - strand at 5210.164 kb on - strand at 5210.201 kb on + strand at 5210.201 kb on + strand at 5210.202 kb on - strand at 5210.202 kb on - strand at 5210.208 kb on + strand at 5210.208 kb on + strand at 5210.497 kb on - strand, within AO356_23285 at 5210.497 kb on - strand, within AO356_23285 at 5210.497 kb on - strand, within AO356_23285 at 5210.716 kb on - strand, within AO356_23285 at 5210.919 kb on + strand, within AO356_23285 at 5210.919 kb on + strand, within AO356_23285 at 5210.919 kb on + strand, within AO356_23285 at 5210.920 kb on - strand, within AO356_23285 at 5210.920 kb on - strand, within AO356_23285 at 5211.308 kb on + strand at 5211.309 kb on - strand at 5211.309 kb on - strand at 5211.309 kb on - strand at 5211.309 kb on - strand at 5211.309 kb on - strand at 5211.310 kb on + strand at 5211.310 kb on + strand at 5211.337 kb on + strand at 5211.339 kb on + strand at 5211.340 kb on - strand at 5211.639 kb on + strand, within AO356_23290 at 5211.752 kb on + strand, within AO356_23290 at 5211.752 kb on + strand, within AO356_23290 at 5211.752 kb on + strand, within AO356_23290 at 5211.752 kb on + strand, within AO356_23290 at 5211.752 kb on + strand, within AO356_23290 at 5211.753 kb on - strand, within AO356_23290 at 5211.753 kb on - strand, within AO356_23290 at 5211.753 kb on - strand, within AO356_23290 at 5211.753 kb on - strand, within AO356_23290 at 5211.885 kb on + strand at 5211.886 kb on - strand at 5212.093 kb on + strand, within AO356_23295 at 5212.279 kb on + strand, within AO356_23295 at 5212.279 kb on + strand, within AO356_23295 at 5212.279 kb on + strand, within AO356_23295 at 5212.279 kb on + strand, within AO356_23295 at 5212.280 kb on - strand, within AO356_23295 at 5212.280 kb on - strand, within AO356_23295 at 5212.280 kb on - strand, within AO356_23295 at 5212.280 kb on - strand, within AO356_23295 at 5212.280 kb on - strand, within AO356_23295
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 5,209,393 - AO356_23280 0.75 +0.2 5,209,557 + AO356_23280 0.81 +0.2 5,209,557 + AO356_23280 0.81 -0.9 5,209,557 + AO356_23280 0.81 +0.5 5,209,557 + AO356_23280 0.81 -0.5 5,209,558 - AO356_23280 0.81 -0.2 5,209,636 + AO356_23280 0.83 -0.5 5,209,636 + AO356_23280 0.83 +0.2 5,209,636 + AO356_23280 0.83 -0.4 5,209,637 - AO356_23280 0.83 +0.2 5,209,637 - AO356_23280 0.83 +0.8 5,209,637 - AO356_23280 0.83 -0.2 5,209,638 + AO356_23280 0.84 +0.1 5,209,638 + AO356_23280 0.84 +0.1 5,209,638 + AO356_23280 0.84 +0.3 5,209,638 + AO356_23280 0.84 +0.3 5,209,638 + AO356_23280 0.84 -0.2 5,209,638 + AO356_23280 0.84 +0.6 5,209,638 + AO356_23280 0.84 +0.6 5,209,639 - AO356_23280 0.84 -1.6 5,209,639 - AO356_23280 0.84 +0.4 5,209,639 - AO356_23280 0.84 +0.8 5,209,639 - AO356_23280 0.84 +0.1 5,209,639 - AO356_23280 0.84 +0.6 5,209,639 - AO356_23280 0.84 -0.2 5,209,639 - AO356_23280 0.84 +0.7 5,209,824 + AO356_23280 0.90 +0.3 5,209,824 + AO356_23280 0.90 -1.5 5,209,824 + AO356_23280 0.90 -1.8 5,209,824 + AO356_23280 0.90 +0.7 5,209,824 + AO356_23280 0.90 +0.6 5,209,824 + AO356_23280 0.90 +0.2 5,209,825 - AO356_23280 0.90 -1.1 5,209,825 - AO356_23280 0.90 -0.4 5,209,825 - AO356_23280 0.90 -0.9 5,209,825 - AO356_23280 0.90 -0.9 5,209,825 - AO356_23280 0.90 -0.4 5,209,825 - AO356_23280 0.90 +1.1 5,209,825 - AO356_23280 0.90 +0.4 5,209,825 - AO356_23280 0.90 +0.6 5,209,825 - AO356_23280 0.90 -1.2 5,209,827 + +0.0 5,209,836 + -0.2 5,209,837 - -0.3 5,209,941 + -0.3 5,209,941 + -0.6 5,209,941 + +0.5 5,209,941 + +0.4 5,209,942 - -0.8 5,209,956 - +0.8 5,209,981 - -1.9 5,210,053 + +0.4 5,210,103 - -1.2 5,210,103 - +0.1 5,210,108 + -2.0 5,210,109 - -0.5 5,210,119 + -0.0 5,210,119 + -0.4 5,210,120 - +0.9 5,210,120 - -0.3 5,210,120 - -0.8 5,210,120 - +0.3 5,210,120 - +0.5 5,210,120 - -1.1 5,210,120 - -0.2 5,210,154 + -0.6 5,210,154 + -1.6 5,210,154 + -1.3 5,210,155 - -0.6 5,210,155 - -0.4 5,210,155 - +0.8 5,210,155 - -0.7 5,210,155 - -0.2 5,210,163 + -0.3 5,210,164 - -0.9 5,210,164 - +0.8 5,210,201 + -0.1 5,210,201 + -0.1 5,210,202 - -0.1 5,210,202 - +0.4 5,210,208 + -0.1 5,210,208 + -0.8 5,210,497 - AO356_23285 0.17 +1.3 5,210,497 - AO356_23285 0.17 +0.2 5,210,497 - AO356_23285 0.17 +0.9 5,210,716 - AO356_23285 0.39 +0.2 5,210,919 + AO356_23285 0.59 -0.5 5,210,919 + AO356_23285 0.59 +0.4 5,210,919 + AO356_23285 0.59 +0.2 5,210,920 - AO356_23285 0.59 +1.0 5,210,920 - AO356_23285 0.59 -0.0 5,211,308 + -0.1 5,211,309 - +0.7 5,211,309 - -0.0 5,211,309 - -1.2 5,211,309 - -0.2 5,211,309 - +0.5 5,211,310 + -1.3 5,211,310 + -0.5 5,211,337 + -1.4 5,211,339 + +0.2 5,211,340 - +0.7 5,211,639 + AO356_23290 0.53 +0.1 5,211,752 + AO356_23290 0.73 +1.4 5,211,752 + AO356_23290 0.73 -0.9 5,211,752 + AO356_23290 0.73 +0.4 5,211,752 + AO356_23290 0.73 +0.4 5,211,752 + AO356_23290 0.73 -0.5 5,211,753 - AO356_23290 0.73 -1.8 5,211,753 - AO356_23290 0.73 +0.4 5,211,753 - AO356_23290 0.73 -0.5 5,211,753 - AO356_23290 0.73 -0.0 5,211,885 + -0.4 5,211,886 - +0.4 5,212,093 + AO356_23295 0.12 -0.1 5,212,279 + AO356_23295 0.25 +0.1 5,212,279 + AO356_23295 0.25 +0.6 5,212,279 + AO356_23295 0.25 +0.6 5,212,279 + AO356_23295 0.25 -0.3 5,212,280 - AO356_23295 0.25 +1.5 5,212,280 - AO356_23295 0.25 +0.1 5,212,280 - AO356_23295 0.25 +0.2 5,212,280 - AO356_23295 0.25 +0.4 5,212,280 - AO356_23295 0.25 +3.0
Or see this region's nucleotide sequence