Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16285

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
3,679,966	+		AO356_16280	0.25	-0.3
3,679,967	-		AO356_16280	0.26	+0.6
3,679,967	-		AO356_16280	0.26	-0.9
3,679,987	+		AO356_16280	0.27	+0.2
3,679,988	-		AO356_16280	0.27	-0.1
3,679,994	+		AO356_16280	0.28	-0.4
3,679,994	+		AO356_16280	0.28	-0.2
3,679,994	+		AO356_16280	0.28	-0.8
3,679,994	+		AO356_16280	0.28	+0.2
3,679,994	+		AO356_16280	0.28	-0.7
3,679,994	+		AO356_16280	0.28	-0.8
3,679,994	+		AO356_16280	0.28	-0.4
3,679,995	-		AO356_16280	0.28	+2.3
3,679,995	-		AO356_16280	0.28	+0.2
3,679,996	+		AO356_16280	0.28	+0.8
3,679,996	+		AO356_16280	0.28	-0.1
3,679,996	+		AO356_16280	0.28	+1.4
3,679,996	+		AO356_16280	0.28	+0.1
3,679,997	-		AO356_16280	0.28	-0.1
3,679,997	-		AO356_16280	0.28	-1.5
3,679,997	-		AO356_16280	0.28	+0.6
3,679,997	-		AO356_16280	0.28	+0.9
3,679,997	-		AO356_16280	0.28	+0.5
3,679,997	-		AO356_16280	0.28	+1.2
3,679,997	-		AO356_16280	0.28	+0.4
3,679,997	-		AO356_16280	0.28	+0.3
3,679,997	-		AO356_16280	0.28	+1.2
3,679,997	-		AO356_16280	0.28	+0.1
3,680,086	+		AO356_16280	0.36	+1.1
3,680,189	-		AO356_16280	0.45	+1.8
3,680,200	+		AO356_16280	0.45	+0.0
3,680,200	+		AO356_16280	0.45	-0.6
3,680,200	+		AO356_16280	0.45	+0.1
3,680,201	-		AO356_16280	0.46	+0.6
3,680,206	+		AO356_16280	0.46	-0.6
3,680,207	-		AO356_16280	0.46	-1.4
3,680,207	-		AO356_16280	0.46	+1.0
3,680,207	-		AO356_16280	0.46	-0.0
3,680,276	-		AO356_16280	0.52	-1.0
3,680,353	+		AO356_16280	0.59	+1.0
3,680,377	+		AO356_16280	0.61	+0.2
3,680,378	-		AO356_16280	0.61	-0.2
3,680,450	-		AO356_16280	0.67	-0.0
3,680,450	-		AO356_16280	0.67	+0.2
3,680,450	-		AO356_16280	0.67	+0.8
3,680,458	+		AO356_16280	0.68	-0.9
3,680,459	-		AO356_16280	0.68	-0.4
3,680,459	-		AO356_16280	0.68	-0.3
3,680,500	+		AO356_16280	0.71	+1.6
3,680,545	+		AO356_16280	0.75	-1.3
3,680,545	+		AO356_16280	0.75	+0.2
3,680,545	+		AO356_16280	0.75	+0.4
3,680,546	-		AO356_16280	0.75	-0.2
3,680,546	-		AO356_16280	0.75	+0.9
3,680,575	+		AO356_16280	0.78	-0.5
3,680,575	+		AO356_16280	0.78	-0.1
3,680,575	+		AO356_16280	0.78	+0.6
3,680,575	+		AO356_16280	0.78	+0.7
3,680,575	+		AO356_16280	0.78	-1.2
3,680,575	+		AO356_16280	0.78	+1.3
3,680,575	+		AO356_16280	0.78	+1.0
3,680,576	-		AO356_16280	0.78	+0.9
3,680,576	-		AO356_16280	0.78	+0.7
3,680,576	-		AO356_16280	0.78	+1.3
3,680,583	-		AO356_16280	0.78	+0.1
3,680,583	-		AO356_16280	0.78	-0.3
3,680,583	-		AO356_16280	0.78	-0.2
3,680,650	+		AO356_16280	0.84	+0.1
3,680,650	+		AO356_16280	0.84	+0.5
3,680,650	+		AO356_16280	0.84	-0.4
3,680,650	+		AO356_16280	0.84	+1.3
3,680,650	+		AO356_16280	0.84	+0.5
3,680,650	+		AO356_16280	0.84	-0.2
3,680,651	-		AO356_16280	0.84	-1.6
3,680,651	-		AO356_16280	0.84	-0.0
3,680,754	+				+0.9
3,680,755	-				-0.3
3,680,755	-				+1.2
3,680,755	-				-0.2
3,680,755	-				-0.2
3,680,755	-				+0.1
3,680,755	-				+1.6
3,680,820	+				+0.2
3,680,888	-				+0.0
3,680,931	-				+0.9
3,680,944	+				-1.2
3,680,973	+				+0.5
3,680,973	+				+1.0
3,680,974	-				-1.1
3,680,974	-				-0.2
3,681,022	+				+0.1
3,681,022	+				-0.1
3,681,022	+				+0.1
3,681,022	+				+1.1
3,681,022	+				+1.4
3,681,022	+				+0.4
3,681,022	+				-0.2
3,681,022	+				-0.3
3,681,022	+				-1.2
3,681,023	-				+0.2
3,681,023	-				-0.8
3,681,023	-				-0.2
3,681,023	-				-1.0
3,681,023	-				+0.1
3,681,023	-				+0.4
3,681,023	-				+0.5
3,681,023	-				+0.5
3,681,023	-				-0.6
3,681,023	-				+0.2
3,681,023	-				-0.6
3,681,023	-				+1.8
3,681,023	-				-1.2
3,681,023	-				+0.1
3,681,080	+				-1.0
3,681,081	-				+0.4
3,681,102	+		AO356_16285	0.11	+0.3
3,681,102	+		AO356_16285	0.11	-0.2
3,681,102	+		AO356_16285	0.11	+0.1
3,681,102	+		AO356_16285	0.11	+0.8
3,681,103	-		AO356_16285	0.11	-0.9
3,681,103	-		AO356_16285	0.11	-0.8
3,681,103	-		AO356_16285	0.11	-0.4
3,681,103	-		AO356_16285	0.11	+0.7
3,681,103	-		AO356_16285	0.11	-0.1
3,681,103	-		AO356_16285	0.11	-0.4
3,681,103	-		AO356_16285	0.11	-0.8
3,681,103	-		AO356_16285	0.11	+0.8
3,681,144	+		AO356_16285	0.14	+0.7
3,681,144	+		AO356_16285	0.14	+1.3
3,681,144	+		AO356_16285	0.14	-1.1
3,681,145	-		AO356_16285	0.14	+0.4
3,681,145	-		AO356_16285	0.14	+0.3
3,681,145	-		AO356_16285	0.14	+0.3
3,681,145	-		AO356_16285	0.14	+1.0
3,681,171	+		AO356_16285	0.16	-0.1
3,681,171	+		AO356_16285	0.16	+0.0
3,681,171	+		AO356_16285	0.16	-0.7
3,681,171	+		AO356_16285	0.16	+1.5
3,681,172	-		AO356_16285	0.16	-0.2
3,681,172	-		AO356_16285	0.16	+0.5
3,681,172	-		AO356_16285	0.16	+0.6
3,681,202	-		AO356_16285	0.18	-0.6
3,681,265	-		AO356_16285	0.22	+0.7
3,681,285	+		AO356_16285	0.24	+0.8
3,681,285	+		AO356_16285	0.24	+0.9
3,681,285	+		AO356_16285	0.24	-0.3
3,681,285	+		AO356_16285	0.24	+0.8
3,681,286	-		AO356_16285	0.24	+0.3
3,681,286	-		AO356_16285	0.24	+0.1
3,681,286	-		AO356_16285	0.24	-0.9
3,681,286	-		AO356_16285	0.24	-0.5
3,681,325	+		AO356_16285	0.26	+0.8
3,681,325	+		AO356_16285	0.26	-0.7
3,681,325	+		AO356_16285	0.26	+0.0
3,681,325	+		AO356_16285	0.26	+0.8
3,681,325	+		AO356_16285	0.26	+0.6
3,681,326	-		AO356_16285	0.26	-0.4
3,681,326	-		AO356_16285	0.26	-0.9
3,681,326	-		AO356_16285	0.26	-0.1
3,681,391	-		AO356_16285	0.31	-0.0
3,681,505	+		AO356_16285	0.39	+0.5
3,681,505	+		AO356_16285	0.39	+0.3
3,681,505	+		AO356_16285	0.39	+0.5
3,681,505	+		AO356_16285	0.39	-0.5
3,681,505	+		AO356_16285	0.39	-0.5
3,681,505	+		AO356_16285	0.39	-0.8
3,681,505	+		AO356_16285	0.39	-0.9
3,681,505	+		AO356_16285	0.39	-0.9
3,681,505	+		AO356_16285	0.39	-0.2
3,681,505	+		AO356_16285	0.39	+1.1
3,681,505	+		AO356_16285	0.39	+0.2
3,681,505	+		AO356_16285	0.39	-1.0
3,681,506	-		AO356_16285	0.39	-0.3
3,681,506	-		AO356_16285	0.39	-1.4
3,681,506	-		AO356_16285	0.39	-0.8
3,681,506	-		AO356_16285	0.39	+0.7
3,681,506	-		AO356_16285	0.39	+0.2
3,681,507	+		AO356_16285	0.39	-0.1
3,681,507	+		AO356_16285	0.39	-0.5
3,681,507	+		AO356_16285	0.39	+0.2
3,681,507	+		AO356_16285	0.39	+1.5
3,681,508	-		AO356_16285	0.39	-0.1
3,681,508	-		AO356_16285	0.39	-0.7
3,681,508	-		AO356_16285	0.39	-0.1
3,681,508	-		AO356_16285	0.39	-0.1
3,681,584	+		AO356_16285	0.45	+1.4
3,681,585	-		AO356_16285	0.45	-0.7
3,681,727	-		AO356_16285	0.55	+0.9
3,681,915	+		AO356_16285	0.68	+0.3
3,681,915	+		AO356_16285	0.68	+1.2
3,681,916	-		AO356_16285	0.68	+0.1
3,681,916	-		AO356_16285	0.68	-0.4
3,682,135	-		AO356_16285	0.83	-0.7
3,682,376	+				-2.0
3,682,377	-				+0.1
3,682,387	+				-1.3
3,682,387	+				-1.3
3,682,387	+				+1.0
3,682,388	-				-0.2
3,682,400	+				+2.2
3,682,437	+				+0.3
3,682,437	+				-0.3
3,682,437	+				+0.4
3,682,437	+				+0.1
3,682,437	+				+1.4
3,682,438	-				+0.2
3,682,438	-				-0.7
3,682,438	-				+0.6
3,682,438	-				-0.1
3,682,438	-				+0.3
3,682,438	-				-1.2
3,682,438	-				-1.5
3,682,438	-				-0.6
3,682,519	-				+0.4
3,682,556	+				-1.3
3,682,556	+				+1.4
3,682,557	-				+0.7
3,682,559	+				+1.2
3,682,559	+				+0.8
3,682,559	+				+0.8
3,682,559	+				-0.1
3,682,560	-				-0.5
3,682,560	-				-0.4
3,682,616	+				-0.2
3,682,616	+				+0.6
3,682,616	+				+2.2
3,682,617	-				+0.6
3,682,617	-				+0.4
3,682,647	+				+1.6
3,682,647	+				+0.2
3,682,648	-				+0.8
3,682,743	+		AO356_16290	0.12	+0.5
3,682,750	+		AO356_16290	0.12	+0.6
3,682,750	+		AO356_16290	0.12	-0.2
3,682,750	+		AO356_16290	0.12	-0.1
3,682,750	+		AO356_16290	0.12	-0.8
3,682,751	-		AO356_16290	0.12	-0.1
3,682,751	-		AO356_16290	0.12	+0.2
3,682,751	-		AO356_16290	0.12	-0.3
3,682,780	-		AO356_16290	0.15	-0.6
3,682,780	-		AO356_16290	0.15	+1.2
3,682,802	-		AO356_16290	0.16	-0.6
3,682,802	-		AO356_16290	0.16	-0.8
3,682,969	+		AO356_16290	0.29	+0.9
3,682,969	+		AO356_16290	0.29	-1.3
3,682,969	+		AO356_16290	0.29	+1.6
3,682,970	-		AO356_16290	0.29	+0.8
3,682,970	-		AO356_16290	0.29	+1.0
3,682,970	-		AO356_16290	0.29	+0.6
3,683,078	+		AO356_16290	0.37	-1.1
3,683,078	+		AO356_16290	0.37	+1.1
3,683,078	+		AO356_16290	0.37	+3.0
3,683,078	+		AO356_16290	0.37	+2.4
3,683,079	-		AO356_16290	0.37	+0.5
3,683,079	-		AO356_16290	0.37	-0.9
3,683,079	-		AO356_16290	0.37	+0.7
3,683,079	-		AO356_16290	0.37	+1.0
3,683,079	-		AO356_16290	0.37	-0.1
3,683,116	+		AO356_16290	0.40	+0.7
3,683,116	+		AO356_16290	0.40	+0.2
3,683,117	-		AO356_16290	0.40	+0.7
3,683,117	-		AO356_16290	0.40	+0.3
3,683,173	+		AO356_16290	0.44	-1.0
3,683,173	+		AO356_16290	0.44	-0.1
3,683,173	+		AO356_16290	0.44	-0.6
3,683,174	-		AO356_16290	0.44	+1.4
3,683,174	-		AO356_16290	0.44	+0.4
3,683,174	-		AO356_16290	0.44	-0.1
3,683,174	-		AO356_16290	0.44	+0.1
3,683,174	-		AO356_16290	0.44	-0.3
3,683,189	-		AO356_16290	0.46	+0.2
3,683,287	+		AO356_16290	0.53	-0.8
3,683,287	+		AO356_16290	0.53	-1.0
3,683,287	+		AO356_16290	0.53	-0.5
3,683,288	-		AO356_16290	0.53	+0.5
3,683,288	-		AO356_16290	0.53	-0.0
3,683,288	-		AO356_16290	0.53	+0.9
3,683,288	-		AO356_16290	0.53	-0.9
3,683,288	-		AO356_16290	0.53	+1.1
3,683,288	-		AO356_16290	0.53	-0.1
3,683,288	-		AO356_16290	0.53	+0.5
3,683,320	+		AO356_16290	0.56	-0.1
3,683,320	+		AO356_16290	0.56	-0.4
3,683,321	-		AO356_16290	0.56	-0.8
3,683,321	-		AO356_16290	0.56	+0.1