Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11180

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
2,538,831	+		AO356_11170	0.89	-0.3
2,538,831	+		AO356_11170	0.89	-0.3
2,538,831	+		AO356_11170	0.89	+1.5
2,538,831	+		AO356_11170	0.89	+0.3
2,538,832	-		AO356_11170	0.89	+0.7
2,538,832	-		AO356_11170	0.89	+1.3
2,538,832	-		AO356_11170	0.89	-0.6
2,538,832	-		AO356_11170	0.89	-0.6
2,538,832	-		AO356_11170	0.89	-1.3
2,538,874	+				+0.2
2,538,875	-				-0.8
2,538,875	-				+0.4
2,538,875	-				-0.4
2,538,912	+				-0.0
2,538,912	+				+1.3
2,538,912	+				-1.0
2,538,912	+				-0.3
2,538,912	+				-0.4
2,538,912	+				-0.2
2,538,912	+				-1.5
2,538,912	+				+0.3
2,538,913	-				-0.6
2,538,913	-				-0.1
2,538,913	-				-0.4
2,538,913	-				+0.1
2,538,913	-				+0.0
2,538,913	-				+1.1
2,538,913	-				+0.4
2,538,913	-				-1.7
2,538,913	-				+0.0
2,538,913	-				-0.0
2,538,913	-				+0.5
2,538,913	-				+0.1
2,538,913	-				-0.3
2,538,913	-				+0.4
2,538,913	-				+1.7
2,538,913	-				-0.3
2,538,913	-				-0.2
2,538,913	-				+0.6
2,538,933	+				-0.2
2,538,933	+				+0.1
2,538,933	+				-0.5
2,538,933	+				-0.0
2,538,933	+				-1.1
2,538,933	+				-1.0
2,538,933	+				-1.5
2,538,934	-				+0.4
2,538,934	-				+0.3
2,538,934	-				+0.6
2,538,934	-				+0.7
2,538,934	-				-0.2
2,538,934	-				-0.2
2,538,934	-				+0.1
2,538,934	-				+0.5
2,538,936	+				-0.0
2,538,936	+				+1.1
2,538,936	+				+1.0
2,538,936	+				+0.4
2,538,936	+				-0.4
2,538,936	+				-0.2
2,538,936	+				-0.3
2,538,936	+				+0.0
2,538,936	+				+0.5
2,538,936	+				+1.2
2,538,936	+				+0.2
2,538,936	+				+0.5
2,538,937	-				+0.8
2,538,937	-				+1.2
2,538,937	-				+0.2
2,538,937	-				+0.7
2,538,937	-				-0.4
2,538,937	-				-0.5
2,538,937	-				-0.8
2,538,937	-				-1.4
2,538,996	+				-0.3
2,538,996	+				+0.0
2,538,996	+				-0.4
2,538,996	+				+0.8
2,538,996	+				+0.2
2,538,997	-				-0.2
2,538,997	-				+0.0
2,539,089	+		AO356_11175	0.20	-1.5
2,539,089	+		AO356_11175	0.20	-0.2
2,539,089	+		AO356_11175	0.20	+0.9
2,539,089	+		AO356_11175	0.20	-0.8
2,539,089	+		AO356_11175	0.20	-1.2
2,539,089	+		AO356_11175	0.20	-1.6
2,539,089	+		AO356_11175	0.20	+0.4
2,539,089	+		AO356_11175	0.20	+0.4
2,539,090	-		AO356_11175	0.20	-0.3
2,539,090	-		AO356_11175	0.20	+0.7
2,539,143	+		AO356_11175	0.26	-0.2
2,539,143	+		AO356_11175	0.26	-0.4
2,539,143	+		AO356_11175	0.26	-0.6
2,539,143	+		AO356_11175	0.26	+0.1
2,539,239	+		AO356_11175	0.36	+0.4
2,539,239	+		AO356_11175	0.36	+0.4
2,539,239	+		AO356_11175	0.36	+0.0
2,539,239	+		AO356_11175	0.36	+0.5
2,539,239	+		AO356_11175	0.36	+1.1
2,539,239	+		AO356_11175	0.36	+0.3
2,539,239	+		AO356_11175	0.36	-0.3
2,539,239	+		AO356_11175	0.36	-0.5
2,539,239	+		AO356_11175	0.36	+0.1
2,539,239	+		AO356_11175	0.36	-0.6
2,539,239	+		AO356_11175	0.36	-0.6
2,539,239	+		AO356_11175	0.36	-0.4
2,539,240	-		AO356_11175	0.37	-0.5
2,539,240	-		AO356_11175	0.37	+0.5
2,539,240	-		AO356_11175	0.37	-0.6
2,539,240	-		AO356_11175	0.37	+0.1
2,539,240	-		AO356_11175	0.37	-0.0
2,539,240	-		AO356_11175	0.37	-0.5
2,539,240	-		AO356_11175	0.37	-0.1
2,539,510	+		AO356_11175	0.67	+0.0
2,539,510	+		AO356_11175	0.67	-0.1
2,539,510	+		AO356_11175	0.67	-0.7
2,539,510	+		AO356_11175	0.67	-0.2
2,539,511	-		AO356_11175	0.67	+0.4
2,539,511	-		AO356_11175	0.67	-0.1
2,539,511	-		AO356_11175	0.67	-0.2
2,539,551	+		AO356_11175	0.72	-0.4
2,539,551	+		AO356_11175	0.72	-0.3
2,539,551	+		AO356_11175	0.72	+0.4
2,539,551	+		AO356_11175	0.72	+1.5
2,539,551	+		AO356_11175	0.72	-0.3
2,539,552	-		AO356_11175	0.72	-0.3
2,539,552	-		AO356_11175	0.72	+0.0
2,539,552	-		AO356_11175	0.72	+0.7
2,539,552	-		AO356_11175	0.72	-0.7
2,539,552	-		AO356_11175	0.72	-1.4
2,539,563	+		AO356_11175	0.73	+0.1
2,539,564	-		AO356_11175	0.73	-0.2
2,539,564	-		AO356_11175	0.73	-0.1
2,539,564	-		AO356_11175	0.73	-0.6
2,539,565	+		AO356_11175	0.73	+1.2
2,539,565	+		AO356_11175	0.73	-0.6
2,539,565	+		AO356_11175	0.73	+1.1
2,539,566	-		AO356_11175	0.73	-0.4
2,539,566	-		AO356_11175	0.73	-1.9
2,539,599	+		AO356_11175	0.77	-0.2
2,539,599	+		AO356_11175	0.77	+0.3
2,539,599	+		AO356_11175	0.77	-0.3
2,539,600	-		AO356_11175	0.77	-0.4
2,539,600	-		AO356_11175	0.77	-0.2
2,539,600	-		AO356_11175	0.77	-0.4
2,539,744	-				+0.6
2,539,791	+				-0.7
2,539,791	+				+0.1
2,539,791	+				+0.3
2,539,791	+				+0.4
2,539,791	+				+0.4
2,539,792	-				-0.2
2,539,792	-				-0.5
2,539,792	-				-1.3
2,539,792	-				+0.7
2,539,812	+				+1.1
2,540,009	+				+0.7
2,540,009	+				-0.3
2,540,049	+				+0.9
2,540,049	+				+1.2
2,540,049	+				+0.9
2,540,049	+				+1.2
2,540,049	+				-1.0
2,540,050	-				+0.1
2,540,050	-				+0.7
2,540,050	-				+0.0
2,540,050	-				+1.0
2,540,050	-				+0.6
2,540,050	-				+0.7
2,540,050	-				+1.0
2,540,050	-				+0.1
2,540,051	+				+0.2
2,540,051	+				-0.6
2,540,051	+				-0.6
2,540,051	+				-0.3
2,540,051	+				-0.2
2,540,051	+				-0.6
2,540,051	+				-0.4
2,540,051	+				-1.1
2,540,051	+				-0.9
2,540,051	+				-1.1
2,540,051	+				+4.1
2,540,051	+				-1.1
2,540,051	+				-0.0
2,540,051	+				+0.5
2,540,051	+				+1.6
2,540,051	+				-0.8
2,540,051	+				+2.1
2,540,051	+				-0.0
2,540,051	+				-0.0
2,540,051	+				-0.5
2,540,051	+				+0.7
2,540,051	+				+0.1
2,540,051	+				+0.5
2,540,051	+				-0.3
2,540,051	+				-0.1
2,540,051	+				-0.3
2,540,051	+				+0.8
2,540,051	+				+0.5
2,540,051	+				-0.3
2,540,051	+				-0.5
2,540,051	+				-0.9
2,540,051	+				+0.5
2,540,051	+				+0.3
2,540,051	+				-0.3
2,540,051	+				+0.7
2,540,051	+				-0.8
2,540,051	+				+0.2
2,540,051	+				+1.0
2,540,051	+				+0.8
2,540,051	+				+0.5
2,540,051	+				-1.7
2,540,051	+				+1.0
2,540,052	-				+0.6
2,540,052	-				+0.5
2,540,052	-				-0.4
2,540,052	-				+1.3
2,540,052	-				-0.0
2,540,052	-				+0.6
2,540,052	-				-2.2
2,540,052	-				+0.3
2,540,052	-				-1.8
2,540,052	-				-1.6
2,540,052	-				+1.2
2,540,052	-				+0.1
2,540,052	-				-0.5
2,540,052	-				-0.3
2,540,052	-				-0.7
2,540,052	-				-0.6
2,540,052	-				-0.1
2,540,052	-				-0.7
2,540,052	-				+0.1
2,540,052	-				+0.3
2,540,052	-				+1.3
2,540,052	-				-0.7
2,540,052	-				+0.0
2,540,052	-				-0.8
2,540,052	-				+0.8
2,540,052	-				-0.1
2,540,052	-				+1.3
2,540,052	-				-0.1
2,540,052	-				+0.7
2,540,052	-				-1.2
2,540,052	-				+0.7
2,540,052	-				-1.1
2,540,052	-				-1.4
2,540,052	-				-0.5
2,540,052	-				-0.9
2,540,052	-				-0.2
2,540,052	-				+0.8
2,540,052	-				-0.5
2,540,208	+		AO356_11185	0.17	+0.3
2,540,209	-		AO356_11185	0.17	+0.4
2,540,209	-		AO356_11185	0.17	-0.2
2,540,209	-		AO356_11185	0.17	-0.3
2,540,499	+		AO356_11185	0.56	-1.4
2,540,499	+		AO356_11185	0.56	-0.5
2,540,500	-		AO356_11185	0.56	-0.2
2,540,500	-		AO356_11185	0.56	+0.3
2,540,500	-		AO356_11185	0.56	+0.0
2,540,500	-		AO356_11185	0.56	+0.3
2,540,500	-		AO356_11185	0.56	-0.2
2,540,622	+		AO356_11185	0.73	-1.3
2,540,622	+		AO356_11185	0.73	-1.1
2,540,758	-				-0.5
2,540,917	+		AO356_11190	0.22	-0.3
2,540,917	+		AO356_11190	0.22	-0.2
2,540,917	+		AO356_11190	0.22	+0.9
2,540,917	+		AO356_11190	0.22	+0.6
2,540,917	+		AO356_11190	0.22	+0.4
2,540,917	+		AO356_11190	0.22	-0.5
2,540,917	+		AO356_11190	0.22	-0.7
2,540,917	+		AO356_11190	0.22	+0.5
2,540,917	+		AO356_11190	0.22	-1.0
2,540,917	+		AO356_11190	0.22	+0.1
2,540,918	-		AO356_11190	0.22	-0.2
2,540,918	-		AO356_11190	0.22	-0.5
2,540,918	-		AO356_11190	0.22	-0.7
2,540,918	-		AO356_11190	0.22	-0.4
2,540,918	-		AO356_11190	0.22	+0.2
2,540,918	-		AO356_11190	0.22	+0.5
2,540,918	-		AO356_11190	0.22	-1.0
2,540,918	-		AO356_11190	0.22	-0.6
2,540,918	-		AO356_11190	0.22	+1.2
2,540,918	-		AO356_11190	0.22	-0.3
2,540,954	-		AO356_11190	0.28	-0.7
2,540,954	-		AO356_11190	0.28	+0.7