Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04225

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04220 and AO356_04225 are separated by 381 nucleotidesAO356_04225 and AO356_04230 are separated by 150 nucleotidesAO356_04230 and AO356_04235 are separated by 50 nucleotides AO356_04220: AO356_04220 - hypothetical protein, at 958,935 to 959,801 _04220 AO356_04225: AO356_04225 - FMN-dependent NADH-azoreductase, at 960,183 to 960,782 _04225 AO356_04230: AO356_04230 - 3-phosphoglycerate kinase, at 960,933 to 961,247 _04230 AO356_04235: AO356_04235 - LysR family transcriptional regulator, at 961,298 to 962,221 _04235 Position (kb) 960 961Strain fitness (log2 ratio) -2 -1 0 1 2 3at 959.270 kb on - strand, within AO356_04220at 959.270 kb on - strand, within AO356_04220at 959.270 kb on - strand, within AO356_04220at 959.275 kb on + strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.333 kb on - strand, within AO356_04220at 959.354 kb on - strand, within AO356_04220at 959.522 kb on + strand, within AO356_04220at 959.522 kb on + strand, within AO356_04220at 959.523 kb on - strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.559 kb on + strand, within AO356_04220at 959.560 kb on - strand, within AO356_04220at 959.575 kb on + strand, within AO356_04220at 959.575 kb on + strand, within AO356_04220at 959.576 kb on - strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.587 kb on + strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.588 kb on - strand, within AO356_04220at 959.716 kb on + strandat 959.716 kb on + strandat 959.717 kb on - strandat 959.717 kb on - strandat 959.740 kb on + strandat 959.741 kb on - strandat 959.790 kb on + strandat 959.790 kb on + strandat 959.794 kb on + strandat 959.795 kb on - strandat 959.951 kb on + strandat 959.961 kb on - strandat 959.961 kb on - strandat 959.961 kb on - strandat 959.974 kb on + strandat 960.026 kb on - strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.093 kb on + strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.094 kb on - strandat 960.149 kb on + strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.150 kb on - strandat 960.316 kb on + strand, within AO356_04225at 960.316 kb on + strand, within AO356_04225at 960.421 kb on + strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.422 kb on - strand, within AO356_04225at 960.493 kb on + strand, within AO356_04225at 960.493 kb on + strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.494 kb on - strand, within AO356_04225at 960.789 kb on + strandat 960.790 kb on - strandat 960.790 kb on - strandat 960.790 kb on - strandat 960.831 kb on + strandat 960.832 kb on - strandat 960.864 kb on - strandat 961.096 kb on + strand, within AO356_04230at 961.096 kb on + strand, within AO356_04230at 961.096 kb on + strand, within AO356_04230at 961.097 kb on - strand, within AO356_04230at 961.139 kb on - strand, within AO356_04230at 961.147 kb on + strand, within AO356_04230at 961.148 kb on - strand, within AO356_04230at 961.279 kb on - strandat 961.279 kb on - strandat 961.279 kb on - strandat 961.412 kb on + strand, within AO356_04235at 961.412 kb on + strand, within AO356_04235

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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959,270 - AO356_04220 0.39 -0.2
959,270 - AO356_04220 0.39 -0.4
959,270 - AO356_04220 0.39 +2.4
959,275 + AO356_04220 0.39 +1.7
959,333 - AO356_04220 0.46 +0.3
959,333 - AO356_04220 0.46 +0.4
959,333 - AO356_04220 0.46 +0.3
959,333 - AO356_04220 0.46 +1.0
959,354 - AO356_04220 0.48 -1.2
959,522 + AO356_04220 0.68 +0.6
959,522 + AO356_04220 0.68 +0.5
959,523 - AO356_04220 0.68 +0.2
959,559 + AO356_04220 0.72 -0.0
959,559 + AO356_04220 0.72 -1.2
959,559 + AO356_04220 0.72 -0.8
959,560 - AO356_04220 0.72 +0.5
959,575 + AO356_04220 0.74 +1.4
959,575 + AO356_04220 0.74 -0.0
959,576 - AO356_04220 0.74 +0.4
959,587 + AO356_04220 0.75 +0.4
959,587 + AO356_04220 0.75 -0.0
959,587 + AO356_04220 0.75 -1.6
959,588 - AO356_04220 0.75 +0.4
959,588 - AO356_04220 0.75 -1.5
959,588 - AO356_04220 0.75 +0.3
959,716 + -1.0
959,716 + -0.2
959,717 - +0.7
959,717 - -0.3
959,740 + -0.6
959,741 - +0.4
959,790 + -0.1
959,790 + -0.1
959,794 + -0.6
959,795 - -1.6
959,951 + -0.2
959,961 - +1.5
959,961 - -0.4
959,961 - +0.4
959,974 + +0.5
960,026 - -0.4
960,093 + +0.5
960,093 + -0.8
960,093 + -0.4
960,093 + +0.3
960,093 + -0.4
960,093 + +0.2
960,093 + +1.0
960,093 + -0.5
960,093 + +0.8
960,093 + -1.0
960,093 + -0.5
960,093 + -0.5
960,094 - -2.2
960,094 - -0.6
960,094 - -0.3
960,094 - -1.3
960,094 - -0.1
960,094 - +0.4
960,094 - -1.0
960,149 + -0.3
960,150 - -0.5
960,150 - +0.4
960,150 - +1.5
960,316 + AO356_04225 0.22 -0.4
960,316 + AO356_04225 0.22 +0.0
960,421 + AO356_04225 0.40 +0.4
960,422 - AO356_04225 0.40 +0.3
960,422 - AO356_04225 0.40 +3.2
960,422 - AO356_04225 0.40 +2.4
960,422 - AO356_04225 0.40 +0.7
960,493 + AO356_04225 0.52 -0.8
960,493 + AO356_04225 0.52 -0.9
960,494 - AO356_04225 0.52 +0.2
960,494 - AO356_04225 0.52 +1.2
960,494 - AO356_04225 0.52 +0.2
960,789 + +0.4
960,790 - -0.9
960,790 - -0.1
960,790 - -0.4
960,831 + +1.5
960,832 - +0.8
960,864 - -0.7
961,096 + AO356_04230 0.52 -0.2
961,096 + AO356_04230 0.52 -0.2
961,096 + AO356_04230 0.52 -0.1
961,097 - AO356_04230 0.52 -1.6
961,139 - AO356_04230 0.65 +0.1
961,147 + AO356_04230 0.68 +0.0
961,148 - AO356_04230 0.68 -1.4
961,279 - +0.0
961,279 - -0.2
961,279 - -1.5
961,412 + AO356_04235 0.12 +0.0
961,412 + AO356_04235 0.12 +0.4

Or see this region's nucleotide sequence