Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03325 and AO356_03330 are separated by 15 nucleotides AO356_03330 and AO356_03335 are separated by 169 nucleotides AO356_03335 and AO356_03340 are separated by 451 nucleotides
AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958
_03325
AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627
_03330
AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132
_03335
AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486
_03340
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.888 kb on + strand at 740.888 kb on + strand at 740.888 kb on + strand at 740.889 kb on - strand at 740.889 kb on - strand at 740.898 kb on + strand at 740.899 kb on - strand at 740.934 kb on - strand at 740.945 kb on + strand at 740.946 kb on - strand at 740.954 kb on + strand at 740.955 kb on - strand at 740.955 kb on - strand at 740.955 kb on - strand at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.092 kb on + strand, within AO356_03330 at 741.093 kb on - strand, within AO356_03330 at 741.177 kb on + strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.178 kb on - strand, within AO356_03330 at 741.326 kb on + strand, within AO356_03330 at 741.327 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.413 kb on - strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.442 kb on + strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.443 kb on - strand, within AO356_03330 at 741.479 kb on - strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.512 kb on + strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.513 kb on - strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.535 kb on + strand, within AO356_03330 at 741.546 kb on + strand, within AO356_03330 at 741.547 kb on - strand, within AO356_03330 at 741.656 kb on + strand at 741.657 kb on - strand at 741.665 kb on + strand at 741.665 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.669 kb on + strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.670 kb on - strand at 741.903 kb on + strand, within AO356_03335 at 742.076 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.078 kb on + strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.079 kb on - strand, within AO356_03335 at 742.113 kb on + strand at 742.119 kb on + strand at 742.120 kb on - strand at 742.132 kb on + strand at 742.133 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.156 kb on - strand at 742.194 kb on + strand at 742.207 kb on + strand at 742.207 kb on + strand at 742.208 kb on - strand at 742.208 kb on - strand at 742.291 kb on + strand at 742.292 kb on - strand at 742.292 kb on - strand at 742.411 kb on + strand at 742.417 kb on + strand at 742.453 kb on + strand at 742.453 kb on + strand at 742.461 kb on - strand at 742.461 kb on - strand at 742.464 kb on - strand at 742.464 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.483 kb on - strand at 742.537 kb on + strand at 742.655 kb on + strand at 742.655 kb on + strand at 742.658 kb on - strand at 742.669 kb on - strand at 742.738 kb on - strand, within AO356_03340 at 742.755 kb on + strand, within AO356_03340 at 742.756 kb on - strand, within AO356_03340 at 742.935 kb on + strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.944 kb on - strand, within AO356_03340 at 742.953 kb on + strand, within AO356_03340 at 742.954 kb on - strand, within AO356_03340
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 740,888 + +0.8 740,888 + +1.4 740,888 + +0.8 740,889 - +1.0 740,889 - -0.3 740,898 + +0.5 740,899 - +0.6 740,934 - -0.8 740,945 + -0.1 740,946 - -0.0 740,954 + +0.4 740,955 - +0.4 740,955 - -0.5 740,955 - +0.2 741,092 + AO356_03330 0.18 -0.6 741,092 + AO356_03330 0.18 +0.0 741,092 + AO356_03330 0.18 -0.4 741,093 - AO356_03330 0.18 +0.7 741,177 + AO356_03330 0.31 -0.7 741,178 - AO356_03330 0.31 -0.8 741,178 - AO356_03330 0.31 -0.9 741,178 - AO356_03330 0.31 -0.4 741,178 - AO356_03330 0.31 +1.0 741,178 - AO356_03330 0.31 +0.6 741,326 + AO356_03330 0.54 -0.3 741,327 - AO356_03330 0.54 -0.6 741,413 - AO356_03330 0.67 +1.1 741,413 - AO356_03330 0.67 +0.7 741,442 + AO356_03330 0.72 -1.2 741,442 + AO356_03330 0.72 -0.7 741,442 + AO356_03330 0.72 +0.1 741,442 + AO356_03330 0.72 -0.6 741,443 - AO356_03330 0.72 -0.3 741,443 - AO356_03330 0.72 +0.7 741,443 - AO356_03330 0.72 -2.1 741,443 - AO356_03330 0.72 +0.9 741,479 - AO356_03330 0.77 +1.2 741,512 + AO356_03330 0.82 -0.4 741,512 + AO356_03330 0.82 -0.5 741,513 - AO356_03330 0.82 -1.7 741,513 - AO356_03330 0.82 +0.5 741,535 + AO356_03330 0.86 -0.4 741,535 + AO356_03330 0.86 -0.4 741,546 + AO356_03330 0.87 +0.4 741,547 - AO356_03330 0.88 -0.9 741,656 + +0.5 741,657 - +0.5 741,665 + +0.8 741,665 + +1.0 741,669 + +0.1 741,669 + +1.0 741,669 + +0.1 741,670 - +0.4 741,670 - +0.4 741,670 - +0.2 741,903 + AO356_03335 0.32 -0.1 742,076 + AO356_03335 0.83 -0.1 742,078 + AO356_03335 0.84 -0.7 742,078 + AO356_03335 0.84 -0.3 742,078 + AO356_03335 0.84 -0.2 742,078 + AO356_03335 0.84 -0.5 742,078 + AO356_03335 0.84 +0.6 742,078 + AO356_03335 0.84 +0.4 742,078 + AO356_03335 0.84 +0.2 742,079 - AO356_03335 0.84 -0.2 742,079 - AO356_03335 0.84 +0.0 742,079 - AO356_03335 0.84 +0.9 742,113 + -0.9 742,119 + -0.3 742,120 - +0.2 742,132 + -1.9 742,133 - +0.2 742,156 - -0.0 742,156 - +1.6 742,156 - -0.5 742,194 + +0.0 742,207 + +1.3 742,207 + +0.9 742,208 - -1.7 742,208 - -0.6 742,291 + +1.1 742,292 - -0.4 742,292 - +0.6 742,411 + -0.8 742,417 + -0.7 742,453 + +0.3 742,453 + +0.6 742,461 - -0.4 742,461 - +1.6 742,464 - +0.8 742,464 - +0.8 742,483 - -1.2 742,483 - -0.5 742,483 - -0.6 742,537 + -1.1 742,655 + +0.0 742,655 + +0.1 742,658 - +1.5 742,669 - +2.3 742,738 - AO356_03340 0.17 -0.1 742,755 + AO356_03340 0.19 +0.7 742,756 - AO356_03340 0.19 -0.0 742,935 + AO356_03340 0.39 +0.7 742,944 - AO356_03340 0.40 -0.6 742,944 - AO356_03340 0.40 +0.7 742,953 + AO356_03340 0.41 +2.2 742,954 - AO356_03340 0.41 -0.6
Or see this region's nucleotide sequence